Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36410 212 / 1e-70 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 207 / 8e-69 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 205 / 5e-68 Family of unknown function (DUF662) (.1) AT5G03660 174 / 6e-56 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G27740 153 / 1e-47 Family of unknown function (DUF662) (.1) AT3G52900 135 / 9e-41 Family of unknown function (DUF662) (.1) AT2G36355 117 / 6e-34 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035563 [exp] 283 / 8e-99 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 233 / 1e-78 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 223 / 1e-75 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10019529 [exp] 173 / 1e-55 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 169 / 7e-54 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10034160 [exp] 120 / 4e-35 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 117 / 7e-33 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115400 [exp] 214 / 5e-72 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 164 / 5e-52 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 156 / 1e-48 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 151 / 4e-47 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10027724 pacid=23156896 polypeptide=Lus10027724 locus=Lus10027724.g ID=Lus10027724.BGIv1.0 annot-version=v1.0 ATGGCAGAGACTCAACCTCCTCCTCAACCTCAACCTCAAGCTCCTCAGCCGTTGAATCAGCTGATGGTTCAGACATCTGGGAGCTTGAGCTTCAGCAGCC AGATGTCCAAGGAAGATGAGGAGATGTCTAGGTCTGTGCTCTCCAACTTCAGGGCTAAAGAGGAAGAGATTGAGAGGAAGAAGACTGAAGTTAGGGAAAG GGTTCAAGCTCAGCTTGGCCGTGTTGAGGAAGAGACCAAGCGTTTGGCGTTGATTCGTGAGGAGCTGGAATCTCTGGCAGATCCAATGAGGAAAGAAGTT GGGATTGTGAGGAAGAGGATTGATACAGTGAACAAGGAACTGAAGCCACTAGGAACTACAGTCCAGAAGAAGGAGAAAGAGTACAAGGATGCACTTGAGG CTTTCAATGATAAGAACAAGGAAAAAGTACAGCTCATCACCAAGCTAATGGAGCTGGTCCACGAAAGCGAGAGGCTGAGGTTGAAGAAGCTGGAGGAACT GAGTAAGAGCATAGATTCCGCTCGCGGCGTGTCTACTGACTGA
AA sequence Show only first row Show all	>Lus10027724 pacid=23156896 polypeptide=Lus10027724 locus=Lus10027724.g ID=Lus10027724.BGIv1.0 annot-version=v1.0 MAETQPPPQPQPQAPQPLNQLMVQTSGSLSFSSQMSKEDEEMSRSVLSNFRAKEEEIERKKTEVRERVQAQLGRVEEETKRLALIREELESLADPMRKEV GIVRKRIDTVNKELKPLGTTVQKKEKEYKDALEAFNDKNKEKVQLITKLMELVHESERLRLKKLEELSKSIDSARGVSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	0	1
					Lus10005391 [exp]	1.4	0.8842
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10040360 [exp]	2.8	0.8651
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	4.9	0.8055
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	9.2	0.8526
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	10.8	0.8639
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	15.5	0.8228
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	15.7	0.7943
AT4G35905			unknown protein		Lus10041873 [exp]	17.8	0.8585
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	20.0	0.8279
AT4G10550			Subtilase family protein (.1.2...		Lus10035478 [exp]	20.6	0.8043

Compare expression of checked genes

Lus10027724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.