Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66950 947 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 932 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 813 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT3G16340 758 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 749 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 748 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 747 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 733 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 676 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 665 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023878 [exp] 1244 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10008984 [exp] 876 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041683 [exp] 839 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 822 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10006277 [exp] 816 / 0 AT1G66950 1791 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10020568 [exp] 798 / 0 AT1G66950 1761 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10024061 [exp] 784 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 784 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 778 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115000 [exp] 984 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.008G024400 [exp] 959 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.009G147100 [exp] 861 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.001G048700 [exp] 843 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 837 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 833 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 833 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 830 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 830 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 828 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10027725 pacid=23156926 polypeptide=Lus10027725 locus=Lus10027725.g ID=Lus10027725.BGIv1.0 annot-version=v1.0 ATGCAAGTATTTTATGTCCCTTTGAACCGCGGGGTTGTCGAACTTCTTTCTGATGAGGCGTTTGACGTCGAAGACGGTGCGGCGTGGGTTGAGAGTGGCC TGATTTTTGGCTGCTTCGCCAATGAGATGCTCGGAATTGAAGATAGAGAAGCCTATGTAGAAAGGCTATTCAAACAGTTCCTAGCATTTTTGGGTATACA TCAGATGGGTCTCTCCCTTTTCCGATTCATTGCTGCTATAGGAAGGACACCGGTTGTGTCAAACACACTTGGTACATTCGTATTGCTCATTGTCTTTGTG CTGGGAGGATTCCTTATTGCCAAAGATGACATTCAACCGTGGATGATATGGGGATACTATATTTCTCCCCTGATGTACGGTCAAAATGCAATTGTCATAA ATGAATTCCTCGACGATAGATGGAGCGCACCTAATCCTGACCCTCGAATTAACACGACTACAGTTGGGAAAGCGATTCTTAAATCGAGAGGTTTCTATAC CGAGGAGCACTGGTACTGGATCTGCATTGCAGCACTCTTCGGGTTCTCTGTTCTGTTCAATGTGTGTTTCATTGCAGCATTGACTTTCTTGAGCCGTATT GATATGGTCATTAGAAGCTCATCAGAAAATAATGGCTCTGGCACTAAGGCAACACGAAGAGGAATGGTTCTGCCCTTTCGACCCCTTCCCCTATCGTTCA ACCATGTCAACTATTATGTCGATATGCCCTCAGAAATGAAGACTCAAGGAGTTACAGAAAGCCGACTCCAACTGTTACGAGATGTTAGCGGCGCTTTTCG ACCAGGGATTCTAACAGCATTGGTAGGTGTAAGTGGAGCAGGGAAGACTACTTTAATGGATGTCTTGGCCGGAAGAAAGACCGGTGGATACATAGAAGGA AACATCAACATTTCAGGTTACCCGAAAAATCAATCGACGTTTGCTCGGGTCAGTGGCTATTGCGAACAGAACGACATCCATTCCCCCTATGTCACTGTAC ACGAATCTCTTGTCTACTCGGCCTGGCTTCGTCTTCCTCAAGATATTGATCAGCGGACTAGAAAGATGTTTGTTGAAGAAGTTATGGAATTGGTTGAGTT GAATCCAATAAGAGATGCCTTAGTTGGACTCCCCGGAATAGACGGCCTTTCAACAGAACAGAGGAAGAGATTAACTATAGCTGTAGAATTGGTTGCTAAT CCTTCTATCATATTCATGGATGAGCCAACATCTGGCCTTGACGCTAGAGCTGCCGCCGTTGTTATGCGTACTGTGAGGAACACAGTAGACACAGGGAGAA CTGTCGTGTGTACAATTCATCAGCCAAGCATCGACATTTTTGAAGCTTTTGATGAGCTACTGTTGATGAAAAGAGGGGGTCAAGTCATCTACGCTGGACC TCTCGGTCGCTGCTCTCGTAACCTCGTCGAGTATTTTGAGGCTGTTCCAGGAGTTCCCAAGATCAACGATGGACACAACCCAGCAACATGGATGCTCGAA GTAACATCACCTGCAATGGAAACACAGCTGAACACAGACTTCACTCGAATTTACGAAAACTCATCTCTTTATCACCGGAACCAAGCGCTTATCAAAGAGC TAAGCATGCCATTACCAGGGTCAAAAGATCTCTACTTCCCAACGAAATACTCCCAGTCTTTCAGCACTCAGTACAGGGCTTGCTTCTGGAAACAGAACTG GTCTTACTGGAGAAACCCTCAGTACAACGCGGTTCGCTTCTGCCTAACGATTCTCATTGGGATCCTCTTCGGCCTTATCTTCTGGAACACAGGAAAGAAA GTGGAGAAGCAGCAAGACCTGATGAATCTACTAGGAGGGATGTACGCAGCAGTCTTCTTCCTTGGAGCAACCAACACTTCCTCCGTACAACCTATCGTCG CTGTCGAAAGGACAGTCTTCTATCGCGAACGAGCAGCTGGAATGTACTCCGCATTGCCTTACGCATTCGGCCAGGTGAGTATAGAGGCGATCTACATAGC AGTGCAAACAGTAGTCTACCACTTGATTATGTACACCATGATCGGCTTCGAATGGGAAGCAGGGAAGTTTTTTCTCTTCTTCTACTTCATCTACATGGCG TTTGTCTACTTCACGCTCTACGGCATGATGGTCGTGGCCCTCACTCCCAACCACCAGATCGCCGCGGTTTGCATGTCCTTCTTCCTCTCGTTTTGGAACT TGTTCGCCGGCTTCCTCATACCCCGGATCGTCCCTGGTGATGTAGCTGACGGTTCAAGAATGGCAGAAAACAAGAATATTGACGTCCTCGATAAACCGCA GAAAAGTGTACCTCCTCCAGGTGTTGGGCGTAAAATATATGACATAGATCCCAGTTTGTCAGGTTTCCGTCAGCATCTTGATCACAGATTTTCCCAGTAC AAAAGTATGCGTGCAGAAATTGACAAGTTTGAAGGTGGCCTGGAGGAATTTTCGCGTGGCTACGAAAAGTTTGGATTCATACGCAGACTTTATTCTCTGG GTATAATCTCAACTGTTCTTCTCAGCGAAACAGGGATAGCATATAGAGAATGGGCACCTGGAGCAACAAGTGCAGCATTAATAGGAGATTTTAACAACTG GAATCCCAAGGCAGATGTCATGATTAGGAATGAGTTTGGCATCTGGGAGATCTTTTTGCCCAACAAAGCAGATGGTTCACCACCAATTTTCCATGGTTCA CGAGTGAAGATACGTATGAACACTCCATCTGGCTTGAAGGATTCTATTCCTGCCTGGATTAAGTTTGCTGTGCAAGCTCCAGGGGAAATGCCATTCAATG GCGTGTACTATGATCCCCCTCAAGAGGTAGAATACGTATTCAAGCACCCACAACCAAATAAACCAAAAACATTGAGGATTTATGAGTCGCACGTTGGTAT GAGCAGTACGGAACCAAAAATCAACACATATGCTAGCTTTAGAGATGATGTGCTTCCACGAATCAAGAAGCTTGGCTACAATGCTGTTCAGATCATGGCT ATTCAGGAGCACTCATACTATGCCAGCTTCGGCCATGCATCGAATAATACATTGGACGGCCTGAACATGTTTGATGGGACAGATTCTCATTACTTTCACT CCGGATCGAAGGGTCGTCATTGGATGTGGGACTCTCGCCTTTTCAACTATGGAAGCTGGGAGGTTCTCAGATACCTCCTCTCAAATGCTAGATGGTGGCT GGACGAGTATAAATTTGACGGGTTCAGATTCGATGGTGTTACCTCGATGATGTACACTCATCACGGATTGCAGATGACTTTTACAGGAAATTACAACGAG TACTTCGGACTGGAAACTGATATAGATGCTGTCGTTTATCTGATGCTCGTTAATGACATGATCCATGGTCTTTTCCCCGGTGCGATCACCATTGGCGAAG ATGATATGTACGACTTCATGGCTCTTGACCGGCCCTTGACTCCTCGTATAGATCGTGGTATAGCATTGCACAAAATGATAAGGCTTATCACCATGGGTTT AGGTGGTGAAGGATACTTGAATTTTATGGGAAACGAATTTGGACATCCTGAATGGATCGATTTTCCAAGAGGTGATCAGCATCTTCCTAATGGTAAATTT GTTCTGGGGAACAATTCAAGTTACGATAAATGCAGACGGAGATTCGATCTGGGCGACGCAGAGTTTCTACGATACCGTGGGATGCAAGAATTTGATCAGG CAATGCACCATCTTGAAGCAACCTATGGCTTCATGACTGACCAGCACCAGTACATATCGCGAAAAGACGAAAAAGACAAGGTGATCGTATTCGAAAGAGG GAACCTCGTGTTCGTCTTCAACTTCCACTGGAACAACAGTTATTCCGACTACAGAGTTGGCTGCAACAAGTCGGGAAAATACAAGATCGTGTTGGACTCA GACGATGCACTCTTCGGAGGCTTCAACAGACTTGATCACAACGCTGAATACTTCTCCCTTGACGGTCTCTACGACAAAAGACCTCGATCTTTCATGGTAT ACACCCCAGCAAGAACAGCAGTTGTCTATGCTTTGGTTGAGGATGCATCAGAAGTCGTCCAGAGCTGA
AA sequence Show only first row Show all	>Lus10027725 pacid=23156926 polypeptide=Lus10027725 locus=Lus10027725.g ID=Lus10027725.BGIv1.0 annot-version=v1.0 MQVFYVPLNRGVVELLSDEAFDVEDGAAWVESGLIFGCFANEMLGIEDREAYVERLFKQFLAFLGIHQMGLSLFRFIAAIGRTPVVSNTLGTFVLLIVFV LGGFLIAKDDIQPWMIWGYYISPLMYGQNAIVINEFLDDRWSAPNPDPRINTTTVGKAILKSRGFYTEEHWYWICIAALFGFSVLFNVCFIAALTFLSRI DMVIRSSSENNGSGTKATRRGMVLPFRPLPLSFNHVNYYVDMPSEMKTQGVTESRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEG NINISGYPKNQSTFARVSGYCEQNDIHSPYVTVHESLVYSAWLRLPQDIDQRTRKMFVEEVMELVELNPIRDALVGLPGIDGLSTEQRKRLTIAVELVAN PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRCSRNLVEYFEAVPGVPKINDGHNPATWMLE VTSPAMETQLNTDFTRIYENSSLYHRNQALIKELSMPLPGSKDLYFPTKYSQSFSTQYRACFWKQNWSYWRNPQYNAVRFCLTILIGILFGLIFWNTGKK VEKQQDLMNLLGGMYAAVFFLGATNTSSVQPIVAVERTVFYRERAAGMYSALPYAFGQVSIEAIYIAVQTVVYHLIMYTMIGFEWEAGKFFLFFYFIYMA FVYFTLYGMMVVALTPNHQIAAVCMSFFLSFWNLFAGFLIPRIVPGDVADGSRMAENKNIDVLDKPQKSVPPPGVGRKIYDIDPSLSGFRQHLDHRFSQY KSMRAEIDKFEGGLEEFSRGYEKFGFIRRLYSLGIISTVLLSETGIAYREWAPGATSAALIGDFNNWNPKADVMIRNEFGIWEIFLPNKADGSPPIFHGS RVKIRMNTPSGLKDSIPAWIKFAVQAPGEMPFNGVYYDPPQEVEYVFKHPQPNKPKTLRIYESHVGMSSTEPKINTYASFRDDVLPRIKKLGYNAVQIMA IQEHSYYASFGHASNNTLDGLNMFDGTDSHYFHSGSKGRHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQMTFTGNYNE YFGLETDIDAVVYLMLVNDMIHGLFPGAITIGEDDMYDFMALDRPLTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKF VLGNNSSYDKCRRRFDLGDAEFLRYRGMQEFDQAMHHLEATYGFMTDQHQYISRKDEKDKVIVFERGNLVFVFNFHWNNSYSDYRVGCNKSGKYKIVLDS DDALFGGFNRLDHNAEYFSLDGLYDKRPRSFMVYTPARTAVVYALVEDASEVVQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	1.0	0.9120
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	2.0	0.8962
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	2.8	0.8501
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	3.0	0.8568
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	10.4	0.8201
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027942 [exp]	11.0	0.8158
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	11.5	0.8060
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	11.7	0.8406
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	12.8	0.8449
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	13.8	0.7803

Compare expression of checked genes

Lus10027725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.