Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 157 / 8e-46 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 156 / 8e-46 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 153 / 2e-44 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 145 / 2e-41 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT1G16030 144 / 3e-41 HSP70B heat shock protein 70B (.1) AT3G12580 142 / 2e-40 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 140 / 2e-40 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G09590 141 / 3e-40 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT1G56410 141 / 3e-40 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 140 / 6e-40 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019915 [exp] 195 / 1e-60 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007777 [exp] 172 / 2e-54 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 176 / 4e-53 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 176 / 6e-53 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 172 / 1e-51 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013551 [exp] 172 / 9e-51 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 168 / 5e-50 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 157 / 1e-46 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 157 / 6e-46 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 157 / 7e-46 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 157 / 7e-46 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 156 / 9e-46 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 154 / 6e-45 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G285500 [exp] 143 / 2e-41 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.009G079700 [exp] 143 / 6e-41 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G042700 [exp] 142 / 1e-40 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 141 / 2e-40 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 140 / 5e-40 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 140 / 6e-40 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10027726 pacid=23157011 polypeptide=Lus10027726 locus=Lus10027726.g ID=Lus10027726.BGIv1.0 annot-version=v1.0 ATGAAGGAAACCGCCGAATCTTATCTCGGAAAGCCCGTAGGCCGAGCTGTAGTGACAGTGCCGGCTTACTTCAACGAAGCACAACGGGAGGCCACCAAGA ACGCCGGCACAATCGTTGGCCTCGACGTCCTCCGCATCATCAACGAGCCTACTGCAGCCGCCCTAGCCTACGGATTCAAAACAGAAAAGAATACTCTGAA GGGGACGACGCCGACCAAGAGTAAGATTCTGGTTAACCATTTGGGTGGCGGCACGTTCTACGTCAGTGTGCTCGAAGTCCACGGTCAAAAATTCCAAGTA CTAGCTACCGGCGGCGACACGCATCTTGGCGGAGGAGATTTTGATCAGCGGGTGATGGAATATTTCATCGATTTGATGAAATAG
AA sequence Show only first row Show all	>Lus10027726 pacid=23157011 polypeptide=Lus10027726 locus=Lus10027726.g ID=Lus10027726.BGIv1.0 annot-version=v1.0 MKETAESYLGKPVGRAVVTVPAYFNEAQREATKNAGTIVGLDVLRIINEPTAAALAYGFKTEKNTLKGTTPTKSKILVNHLGGGTFYVSVLEVHGQKFQV LATGGDTHLGGGDFDQRVMEYFIDLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10027726 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	10.8	0.8638
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	11.5	0.8289
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	17.0	0.8541
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	20.2	0.8456
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	21.2	0.8432
					Lus10019410 [exp]	28.1	0.8426
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	29.1	0.8305
					Lus10006075 [exp]	31.3	0.8335
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	34.3	0.8317
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	39.2	0.8310

Compare expression of checked genes

Lus10027726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.