Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36380 908 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 907 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15520 730 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G59870 730 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 716 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 716 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G30842 649 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 648 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 642 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT2G26910 642 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014384 [exp] 1032 / 0 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10023879 [exp] 961 / 0 AT2G36380 1369 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10008984 [exp] 858 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041685 [exp] 759 / 0 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 758 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 753 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 749 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 748 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 744 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115000 [exp] 965 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.008G024400 [exp] 925 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.018G032900 [exp] 777 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 768 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 765 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 763 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 762 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 759 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 759 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 756 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10027727 pacid=23156953 polypeptide=Lus10027727 locus=Lus10027727.g ID=Lus10027727.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCATTTACCGGAGGCGACCTCGTCGGCTCGACTAGTAGCCGGAGGAGCTTCAGCTCGACAAGCCAGCGAAGCTGGTTGTCGACGGCGGTGG CAGCGACGGACGTCTTCAGCAGCGGTGGAGCCAGGGAGAAGGAAGACGAAGAGGAGGAGCTCCGTTGGGCTGCGATCGAGCGGCTGCCGACGTTCGACAG GATGAGGAAAGGAGTCCTGAACACAGTGCTGGATAGCGGAGCTGTTGTTCGGAACGAGGTCGATGTAACGAAGCTTGGAGTTCAGCAGAGGAAGAAATTG ATGGAGAGCATATTGAACGTTGTCGAAGATGATAACGAAAACTTCCTAAGAAAAGTCAGAGAGCGAACTGATCGAGTAGGGATTGCGATTCCGAAGATTG AAGTAAGGTACGAGCATTTATCGATTGAAGGAGAGGTTTACGTCGGGAGCAGAGCTCTTCCTTCACTGTTAAACGCCGCCATTAACACGATAGAGAATGT GCTGGGATTGATTCGGCTTGCTCCGTCCAGAAAGAGGAAGATACAAATTCTTCAAGATGTCAGTGGGATAGTGAAGCCCGCCAGGATGACTCTGCTATTA GGTCCTCCGGGGGCTGGGAAAACAACACTGCTACTCGCTCTTGCAGGGAAACTCGACAGTGATGTAAAGGCTTCTGGAAAGACCACCTACTGCGGTCATG AGTTCAGCGAGTTTGTACCACAGAGGACGTGTGCTTACATTAGTCAGTATGATCTCCACCATGGCGAGTTCACGGTAAGAGAGACGTTTGACTTCTCAGG GCAATGCTTAGGTGTGGGGACAAGATATGAAATGCTGGCAGAGCTATGTCGGCGAGAGAAAGCTGCAGGAATCCTGCCTGATCCTGAGATTGACGCATTC ATGAAGGCGACTGCATTGTCTGGTCAGAAGACTAGCTTGGTTACGGATTACATTCTCAAGCTCCTTGGACTGGATATATGCGCGGATATCATTGTTGGAA ATGAGATGCAGAGAGGGATTTCTGGAGGGCAGAAGAAGCGTGTAACAACTGGAGAAATGTTGGTTGGACCAGCAAAGGTCATGTTGATGGACGAAATATC AACCGGATTGGACAGCTCTACAACTTTCCAAATCTGCAAGTTCATGAGACAAATGGTCCATATTCTGGAAGTAACCATGATAATTTCTCTTCTACAGCCA GCGCCTGAGACGTTTGAGCTCTTTGATGACATTATATTACTTGCAGAAGGAAGGATTGTGTACCAAGGTCCAAGGGAGAACGTACTCGAGTTCTTCGAGT CAATGGGATTCAAATGCCCTGAAAGGAAAGGAGTTGCCGACTTTCTGCAGGAAGTAACTTCGAAAAAGGACCAGGAACAATACTGGCATAACAAGAACCA GCCTTACAGATTCATTTCGGCCACCGAGTTTACACTAGGCTTCAACTCTTCCCACATAGGCCGGAAGCTTGCAGCCGACCTTCAAGTTCCTTACGACAGG TCCAAGGTACATCCAGCTGCACTAGTGAAAACCAAGTACGGGATCTCGAACTGGAATCTCTTCAAGGCGTGCTTCTCAAGGGAGTGGCTCCTGATGAAGC GACACAGCTTTGTGTACATATTCAAGACCAGCCAGATAACCATCATGTCGATCATTGCCTTCACCGTGTTCCTGAGGACGACAATGGTAGTTGGGACTGT TAGAGACGGAGACAAGTTCTTGGGAGCGTTGTTCTTCAGCCTCATTAACGTGATGTTTAATGGGATGGCTGAACTTGCAATGACTGTTTTCAGGCTGCCT GTGTTTTACAAGCAAAGGGATTTCTTGTTTTATCCGGCTTGGGCATTTGCAGTACCTATATGGATCCTTCGAATTCCTGTGTCGCTCGTCGAGTCATCCA TATGGATAGCTCTTACTTACTACACCATTGGTTTTGCGCCAGCTGCTAGCAGAAGTCTAAGACAGTTAAGTCAAGAAGCAGTGAACATTAGAAATCTGAA AAACTCCAACCACAATCCACAATCAGTAGGAATCTGA
AA sequence Show only first row Show all	>Lus10027727 pacid=23156953 polypeptide=Lus10027727 locus=Lus10027727.g ID=Lus10027727.BGIv1.0 annot-version=v1.0 MAAAFTGGDLVGSTSSRRSFSSTSQRSWLSTAVAATDVFSSGGAREKEDEEEELRWAAIERLPTFDRMRKGVLNTVLDSGAVVRNEVDVTKLGVQQRKKL MESILNVVEDDNENFLRKVRERTDRVGIAIPKIEVRYEHLSIEGEVYVGSRALPSLLNAAINTIENVLGLIRLAPSRKRKIQILQDVSGIVKPARMTLLL GPPGAGKTTLLLALAGKLDSDVKASGKTTYCGHEFSEFVPQRTCAYISQYDLHHGEFTVRETFDFSGQCLGVGTRYEMLAELCRREKAAGILPDPEIDAF MKATALSGQKTSLVTDYILKLLGLDICADIIVGNEMQRGISGGQKKRVTTGEMLVGPAKVMLMDEISTGLDSSTTFQICKFMRQMVHILEVTMIISLLQP APETFELFDDIILLAEGRIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSKKDQEQYWHNKNQPYRFISATEFTLGFNSSHIGRKLAADLQVPYDR SKVHPAALVKTKYGISNWNLFKACFSREWLLMKRHSFVYIFKTSQITIMSIIAFTVFLRTTMVVGTVRDGDKFLGALFFSLINVMFNGMAELAMTVFRLP VFYKQRDFLFYPAWAFAVPIWILRIPVSLVESSIWIALTYYTIGFAPAASRSLRQLSQEAVNIRNLKNSNHNPQSVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	1.0	0.9120
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	5.7	0.8263
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	8.0	0.8310
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	9.8	0.8166
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	12.7	0.7661
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	13.9	0.8027
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	14.0	0.7993
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	14.1	0.8164
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	14.5	0.8152
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	15.6	0.7564

Compare expression of checked genes

Lus10027727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.