Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 778 / 0 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G21110 283 / 4e-92 G10 family protein (.1) AT4G11640 132 / 2e-33 ATSR serine racemase (.1) AT2G36370 107 / 7e-24 ubiquitin-protein ligases (.1) AT3G61440 56 / 5e-08 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 44 / 0.0003 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT4G14880 44 / 0.0004 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT5G28237 44 / 0.0004 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT2G43750 44 / 0.0004 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014390 [exp] 859 / 0 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10023884 [exp] 857 / 0 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 682 / 0 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10035562 [exp] 313 / 2e-103 AT4G21110 273 / 5e-96 G10 family protein (.1) Lus10014385 [exp] 302 / 5e-99 AT4G21110 271 / 2e-95 G10 family protein (.1) Lus10023881 [exp] 300 / 2e-98 AT4G21110 271 / 3e-95 G10 family protein (.1) Lus10035561 [exp] 184 / 4e-48 AT2G36370 807 / 0.0 ubiquitin-protein ligases (.1) Lus10008490 [exp] 139 / 7e-36 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10020520 [exp] 95 / 9e-22 AT3G10050 94 / 5e-23 L-O-methylthreonine resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 836 / 0 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1) Potri.009G147000 [exp] 279 / 2e-90 AT4G21110 244 / 1e-84 G10 family protein (.1) Potri.004G186600 [exp] 275 / 9e-89 AT4G21110 239 / 1e-82 G10 family protein (.1) Potri.001G106000 [exp] 126 / 1e-31 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.002G160800 [exp] 57 / 2e-08 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 57 / 3e-08 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.008G153300 [exp] 47 / 3e-05 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 47 / 5e-05 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.019G045800 [exp] 46 / 7e-05 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.005G048200 [exp] 45 / 0.0002 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01125 [flax] [poplar] G10 G10 protein CL0070 [flax] [poplar] ACT PF00585 [flax] [poplar] Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10027728 pacid=23156994 polypeptide=Lus10027728 locus=Lus10027728.g ID=Lus10027728.BGIv1.0 annot-version=v1.0 ATGGGCGCGATGGAGTATTTGACGAATATACTCTCGGCGAAGGTGTACGACGTGGCGATTGAATCGCCGATGCAGTTCGCGCCGAAGCTGTCGGAGAAGC TCGGCGTTAATGTTTGGCTTAAGCGGGAGGATTTGCAGCCTGTGTTCTCGTTCAAGCTGCGAGGAGCTTACAACATGATGTCGAAGCTTACAAAAGAGCA GTTAGAAAAGGGAGTAATCACCTCATCAGCTGGTAACCATGCCCAAGGAGTTGCGTTAGCTGCCAAAAGACTAGGCTGCAATGCTATAATTGCTATGCCT GTCACTACGCCTGATATCAAGTGGAAATCAGTTGAAAGATTAGGTGCCACAGTTGTTCTGATTGGAGACACTTACGATGAGGCACAAGCATATGCCAAAC AGAGGGTCAAACAGGAAGGTTTTACATTTGTACCTCCTTTTGATCACCCGGATGTGATTATGGGACAAGGAACAGTTGGGATGGAAATAGTTCGCCAAAT GCAAGGCCCATTGCACGCTATATTCGTACCTGTTGGGGGTGGTGGGTTGATCTCCGGTATTGCTGCGTATGTGAAGAGAGTTAATCCCAATGTAAAGATC ATCGGAGTAGAACCAGCAGACGCAAATGCTATGGCTTTGTCACTGCATCACAATGAGAGAGTTATGTTGGACCAGGTTGGAGGGTTTGCAGATGGTGTTG CTGTTAAAGTGGTGGGCGAGGAGACTTTTCGGTTATGCAAAGAATTGATAGATGGTGTAGTTCTAGTTAGCCGTGATGCTATCTGTGCTTCGATAAAAGA CATGTTCGAAGAGAAAAGGAGCATATTAGAGCCAGCAGGTGCTCTTGCTCTAGCTGGTGCTGAAGCCTACTGCAAATATTACGGTCTAAAGGGAGAAAAT GTTGTGGCAGTAGCTAGCGGGGCGAATATGAACTTCGATAAACTGAGAGTGGTGACTGAACTGGCCAATGTTGGTAGACAACAAGAAGCTGTGCTTGCGA CACTCTTACCTGAGGAGCCTGGGAGCTTCAAACACTTCTGTGAACTAGTGGGTCCGATCAACATAACTGAGTTCAAGTATAGAAGTAGTTCTGAAAAGGA AGCCGTTGTTCTGTACAGTGTTGGTCTCCACATGGTTTCTGAACTCGAAGCAATGAAGCAGAGGATGGAATCTGCTGAACTAAGAACTTACAACCTGACC GAAAGTGACTTGGTCAAAGACCACTTGCGTTACTTGATGGGCGGGAGATCATTCGTTGCTGACGAGGTTCTCTGCCGATTTATTTTCCCCGAACGTCCCG GTGCTCTGATGAAGTTCTTGGACGCGTTCAGTCCGCGATGGAACATCACATTGTTCCATTACAGAGGACAGGGTGAAACTGGTGCCAACGTCCTGGTAGG AATCCAAGTTCAGAAAGTCGAGATGGACGAGTTCTACATCCGCGCCAACAATCTTGGCTACGATTTTACAGTCGAATGCGGAAGTGTCACAGCAGGTGAT ATTTCTCCACTCTTCCGCTGCGTAGCCCTTGAATATATCTTGTTGCGCCATAATGGGCCTGGGATTAGCAAAGGCTTTATTCTTGATGCTGCTGCAAAGT TGCCACTGCTTCGAAAGGTATCGCTGGACCTATGCGATGCCCATGAAGGCGACTTAGATCTTCCAGAATTTGCTGACAAGTGCTTTTTGAGTAGCGTGAA GATAGCGAGATGCAGAAAAATGCATACAGGTTGTGGAAGGCTTGTGCATAAAGAAACGTTGGTGTTGGTATGGGATAGTGAACGTTTCAAAGCAAAGATG CCAAAGGTGAAGACAAATCGTGTCAATTACCCAGAGGGCTGGGAATTGATCGAGCCTACTCTTCGCGAACTACAGGCGAAGATGAGAGAAGCTGAGAATG AGTCGCATGATGGTAAGAGGAAGTGCGAGGCGCTATGGCCTATTTTCAAAATAGCACATCAGAAGAGCCGCTATATCTTCGACCTCTATCATCGGAGGAA TGAGATATCAAAGGAGTTGTACGAGTTCTGCCTTGATCAAGGTTACGGGGATCGTAATCTCATTGCGAAGTGGAAGAAGGCTGGCTACGAGCGCTTATGC TGCTTAAGGTGCATACAGCCGAGGGACCATAACTACGCAACTACATGCGTATGTCGAGTGCCGAAGAACATAAGGGAGGAAGAGGTCATAGAATGCGTGC ATTGCGGTTGCAAGGGCTGTGCAAGTGGAGACTGA
AA sequence Show only first row Show all	>Lus10027728 pacid=23156994 polypeptide=Lus10027728 locus=Lus10027728.g ID=Lus10027728.BGIv1.0 annot-version=v1.0 MGAMEYLTNILSAKVYDVAIESPMQFAPKLSEKLGVNVWLKREDLQPVFSFKLRGAYNMMSKLTKEQLEKGVITSSAGNHAQGVALAAKRLGCNAIIAMP VTTPDIKWKSVERLGATVVLIGDTYDEAQAYAKQRVKQEGFTFVPPFDHPDVIMGQGTVGMEIVRQMQGPLHAIFVPVGGGGLISGIAAYVKRVNPNVKI IGVEPADANAMALSLHHNERVMLDQVGGFADGVAVKVVGEETFRLCKELIDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKGEN VVAVASGANMNFDKLRVVTELANVGRQQEAVLATLLPEEPGSFKHFCELVGPINITEFKYRSSSEKEAVVLYSVGLHMVSELEAMKQRMESAELRTYNLT ESDLVKDHLRYLMGGRSFVADEVLCRFIFPERPGALMKFLDAFSPRWNITLFHYRGQGETGANVLVGIQVQKVEMDEFYIRANNLGYDFTVECGSVTAGD ISPLFRCVALEYILLRHNGPGISKGFILDAAAKLPLLRKVSLDLCDAHEGDLDLPEFADKCFLSSVKIARCRKMHTGCGRLVHKETLVLVWDSERFKAKM PKVKTNRVNYPEGWELIEPTLRELQAKMREAENESHDGKRKCEALWPIFKIAHQKSRYIFDLYHRRNEISKELYEFCLDQGYGDRNLIAKWKKAGYERLC CLRCIQPRDHNYATTCVCRVPKNIREEEVIECVHCGCKGCASGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	0	1
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	3.2	0.8714
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	3.5	0.8736
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10028964 [exp]	5.0	0.8627
AT5G44710			unknown protein		Lus10038399 [exp]	13.0	0.8556
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10009644 [exp]	15.3	0.8090
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	17.5	0.8645
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	20.4	0.8644
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	27.7	0.8108
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	28.9	0.8233
AT1G51650			ATP synthase epsilon chain, mi...		Lus10035755 [exp]	29.7	0.8246

Compare expression of checked genes

Lus10027728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.