Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10060 286 / 4e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G20810 86 / 6e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 74 / 6e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 70 / 7e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 68 / 2e-13 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G25340 67 / 1e-12 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT3G25230 64 / 2e-11 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT4G39710 61 / 8e-11 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT2G43560 59 / 3e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 56 / 2e-09 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035560 [exp] 395 / 4e-141 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10016037 [exp] 81 / 6e-18 AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 71 / 7e-14 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038216 [exp] 71 / 1e-13 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 70 / 1e-13 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 70 / 2e-13 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 70 / 3e-13 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10031700 [exp] 69 / 3e-13 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10006949 [exp] 66 / 1e-12 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096600 [exp] 288 / 6e-99 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G254900 [exp] 74 / 1e-15 AT1G20810 272 / 5e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 72 / 4e-14 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 71 / 5e-14 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 71 / 9e-14 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.015G130900 [exp] 66 / 4e-12 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.006G033400 [exp] 62 / 5e-11 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 59 / 2e-10 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.012G119800 [exp] 56 / 3e-09 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 54 / 2e-08 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10027729 pacid=23156982 polypeptide=Lus10027729 locus=Lus10027729.g ID=Lus10027729.BGIv1.0 annot-version=v1.0 ATGGAAGTCTCTCTCTTCCACAGCAGCTACAGATCAGTTCTCCTCCTAAGCAATGAGCTTCCTTACTCGAACACTAATCTCCTCCCAACAGGGAGGAGTC AATCCATCAGAAGAAGAAGACAGAACATGTTACCATGTAGCTGTTCATTGTCTTCTCCAGAGGAGATAAAAAAGGGAAGGAGAGAGCTTATTGGGTGTCT TATTGCTTCAGCTTCTGGGATTGCTCTATCTGATGCTGCTAATGCTGTTAGTACCAGCAGGAGAGCTCTTAGAGGATCAAAGGTGCCTGAGACTGAATAC ACAACTCTTGATAATGGTCTCAAGTACTATGATCTCAAGGTTGGAGGAGGACCAGAAGCTGTGAAGGGATCTCGGGTCGCAGTACGGTTTGTGCCCCCGT CTTTTAAGTTTTTCTTTCCCAAAACTGTATCAAAGATCAAATCGGTCCACTATGTTGCCAAATGGAAAGGGATCACATTCATGACAAGTAGACAAGGACT CGGTGTTGGCGGTGGAACTCCCTATGGATTTGATGTTGGACAGTCCGAAAGAGGCGCAGTCCTTAAGGGGTTAGACCTCGGAGTCGTAGGAATGCGCGTT GGTGGTCAGCGTTTGCTGATAGTTCCTCCGGAGCTGGCATATGGAAACAAAGGAGTTCAGGAGATTCCTCCAAATGCAACCATTGAGTTTGATGTTGAAC TTCTGGCCATCAAGCAAAGTCCATTTGGGTCTGCTGTGAAAGTCGTCGAAGGATAG
AA sequence Show only first row Show all	>Lus10027729 pacid=23156982 polypeptide=Lus10027729 locus=Lus10027729.g ID=Lus10027729.BGIv1.0 annot-version=v1.0 MEVSLFHSSYRSVLLLSNELPYSNTNLLPTGRSQSIRRRRQNMLPCSCSLSSPEEIKKGRRELIGCLIASASGIALSDAANAVSTSRRALRGSKVPETEY TTLDNGLKYYDLKVGGGPEAVKGSRVAVRFVPPSFKFFFPKTVSKIKSVHYVAKWKGITFMTSRQGLGVGGGTPYGFDVGQSERGAVLKGLDLGVVGMRV GGQRLLIVPPELAYGNKGVQEIPPNATIEFDVELLAIKQSPFGSAVKVVEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	0	1
AT5G37360			unknown protein		Lus10004762 [exp]	1.4	0.9648
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	1.4	0.9676
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	2.0	0.9622
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	2.4	0.9646
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	4.6	0.9559
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	4.7	0.9513
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	5.5	0.9527
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	5.8	0.9466
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	6.0	0.9535
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	6.9	0.9540

Compare expression of checked genes

Lus10027729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.