Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03910 91 / 4e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027731 [exp] 218 / 1e-67 AT1G03910 875 / 0.0 unknown protein Lus10035558 [exp] 184 / 7e-55 AT1G03910 870 / 0.0 unknown protein Lus10035559 [exp] 161 / 1e-50 ND 301 / 4e-100 Lus10030000 [exp] 142 / 1e-39 AT1G03910 713 / 0.0 unknown protein Lus10021530 [exp] 118 / 1e-33 AT1G03910 253 / 2e-81 unknown protein Lus10027605 [exp] 106 / 3e-29 AT1G03910 242 / 4e-77 unknown protein Lus10035324 [exp] 43 / 7e-06 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118700 [exp] 78 / 5e-17 AT1G03910 849 / 0.0 unknown protein Potri.001G242900 [exp] 52 / 5e-08 AT1G03910 250 / 1e-76 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027730 pacid=23156968 polypeptide=Lus10027730 locus=Lus10027730.g ID=Lus10027730.BGIv1.0 annot-version=v1.0 ATGACAACAAAAGAAGCCAACTGTATCCAGATTCCAGACCTGGAATCACCGGCGGTGATTCCAGACCTGAAATTACCGCCGGTAGCGGTGGCGTTTGAAG TTGAAGTAGACATGCAGAATCCCGCGCTCGAACGTGCACTTGAACCCCTTCTTGTGAGAGTACTCCCACTCCTTGTTCACTATCCGGAACGCGATATCCT CGTAAGGCGGTCCAGCATGGAACCTGATGATGCATGTCTCGTCGTTGCTTCCATCCTTGTCAATCGTGTAGGCCGGAGCCTTGGTCTTGTCCACCAGGTC CGGGTAGAAGATGTTGAACTTGTATCCTTGAACGATCTTTGGTGGCGGGTTGTCGTGGTCGTAGTGGGTCTGGTTGTACTTGTTCCACTCGTAACCAGTA TGGACTCGGTTGAAGTACTTTGGCTTCCTTGGTCTGTACTTGTCGTGCCACCAGTAAACTGCCGAGTCCAGATTCACTTCAGCTCCCGACCCAAACACCG CATCGCCTTCCTCCATCACTCCCATGACTTTAATGGCCTTCATCTCGAAGTTGTCCGCTGGCGGAAGAGGTGGTTTTGA
AA sequence Show only first row Show all	>Lus10027730 pacid=23156968 polypeptide=Lus10027730 locus=Lus10027730.g ID=Lus10027730.BGIv1.0 annot-version=v1.0 MTTKEANCIQIPDLESPAVIPDLKLPPVAVAFEVEVDMQNPALERALEPLLVRVLPLLVHYPERDILVRRSSMEPDDACLVVASILVNRVGRSLGLVHQV RVEDVELVSLNDLWWRVVVVVVGLVVLVPLVTSMDSVEVLWLPWSVLVVPPVNCRVQIHFSSRPKHRIAFLHHSHDFNGLHLEVVRWRKRWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027730 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	1.0	0.9794
AT5G59613			unknown protein		Lus10005899 [exp]	1.4	0.9570
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	4.2	0.9354
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	6.3	0.9483
AT5G10750			Protein of unknown function (D...		Lus10026242 [exp]	6.6	0.9346
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	6.9	0.9273
AT1G11320			unknown protein		Lus10013574 [exp]	7.1	0.9415
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	7.1	0.9268
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	8.7	0.9490
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	9.8	0.9295

Compare expression of checked genes

Lus10027730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.