Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03910 806 / 0 unknown protein AT2G36815 80 / 5e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035558 [exp] 1050 / 0 AT1G03910 870 / 0.0 unknown protein Lus10030000 [exp] 793 / 0 AT1G03910 713 / 0.0 unknown protein Lus10027730 [exp] 367 / 2e-124 ND 328 / 7e-110 Lus10035559 [exp] 330 / 8e-111 ND 301 / 4e-100 Lus10021530 [exp] 268 / 1e-86 AT1G03910 253 / 2e-81 unknown protein Lus10027605 [exp] 256 / 6e-82 AT1G03910 242 / 4e-77 unknown protein Lus10035324 [exp] 119 / 4e-32 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118700 [exp] 870 / 0 AT1G03910 849 / 0.0 unknown protein Potri.001G242900 [exp] 250 / 2e-76 AT1G03910 250 / 1e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10312 [flax] [poplar] Cactin_mid Conserved mid region of cactin PF09732 [flax] [poplar] CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence Show only first row Show all	>Lus10027731 pacid=23157075 polypeptide=Lus10027731 locus=Lus10027731.g ID=Lus10027731.BGIv1.0 annot-version=v1.0 ATGGGGAGCAGAAACAAGAGAGACCGGAAAAGAAAATTGGAAGAGGAAGAGTCCGAGTCTTCTGTGAGTGAGTCCGAGGACTCTGACTCTTCTCCTCAGA GGAGATCCAAGAGCCGTCGGGAGCGTAGTAGCCATGGCCGGAGCAGAAGCAGCCACAGTAGAAAAGGGAGTTCCAGTGATTCTGGGAGTGACAGTGATGA TAGACGCAAGAAGAAGAAGTCTTCAAGAAAGATAACTGATGATGAAATTGCTGAGTACATGGCGAAGAAAGCTCAGCGGAAGGCTATGAAGGTTGCCAAG AAGTTGAAGGGGCAAACGGTTTCGGGATATTCAAATGACTCTAATCCTTTCGGTGATTCAAACTTAAATGAAAAATTTGTATGGAGGAAGAAGATTGAGA AGGATGTTTATCAAGGTGCGCCACTAGATGATTTTTCGATTAAAGCAGAGAGAAAGAAACAAAAAGAAAGGATGGCAGAGATTGAAAAGGTCAAAAAGAG AAGGGAGGAGAGGGCACTTGGAAAAGCACAGCACGAAGAAGAAATGGCATTGTTGGCTAGAGAACGTGCACGGGCTGAATTCCAAGACTTGGAGAAGAAG GAGGACGAGTTCCATTATGAGCAAAGCAAGTTCAGGTCTGAGATCAGGCTTCGTGAAGGACGAGTGAAACCAATCGATGTGTTGACAAAACACTTAAATG TCTCAGACGATCTCGACATAGAAATAAACGAACCCTATATGGTCTTTAAGGGTTTGACAGTTAAAGAAATGGAAGAACTCCATGATGACATCAAAATGCA TCTGGAAATGGAGCGAACGACACAGACACATGTGGATTATTGGGAGGCCCTTTTGGTAGTCTGCAACTGGGAATTATCAGAAGCTCGGAAAAAAGATGCT CTCGACAGGGCAAGGGTACGGGGCGAGGAACCTCCTGCCGAGTTGCTTGCAGAAGACAGGGGTATGCATGCTGGCATTGAAGCAGATGTGAGAGATCTTC TGGAAGGTAAAACCTCCCAGGAGCTTGATGCATCGAAATCTAAGATTGAGGAGTTGTTGAGTTCTGGAGAAGCAAGGGTAGTAGAGTATTGGCAAGCTGT TCTCAAGCGACTCCAGATTTACAAAGCAAAGGCCATTCTGAAAGAAATTCATGCGAAGATGTTGCGAACGCATTTGAAACGTCTTGAACCAACTCTAGAA GCGGAAGACAAATGGGACAGTGGCAATGAATTGAAGCCAATCGAAGAGGAGAGTGAGCCTGAGGAGAAAGAAGATCTCGAGCCTGTTCATCGTGAGCCAG TGGAGGAAACTCAGGAGGCAGAAGAGGAAGCTGGATCGTTCTCCCCAGAGCTGTTGCATGGAGATGAAGACAAAGAAGAAGCCGTTGATCCTGAAGAGGA TAAAGCTTTACTGGAGAAGAAGCGTACAGCTGTGCTCGAAGAACAGCAGAGGCGCATTCGAGAAGCGATGGCATCAAAACCACCTCTTCCGCCAGCGGAC AACTTCGAGATGAAGGCCATTAAAGTCATGGGAGTGATGGAGGAAGGCGATGCGGTGTTTGGGTCGGGAGCTGAAGTGAATCTGGACTCGGCAGTTTACT GGTGGCACGACAAGTACAGACCAAGGAAGCCAAAGTACTTCAACCGAGTCCATACTGGTTACGAGTGGAACAAGTACAACCAGACCCACTACGACCACGA CAACCCGCCACCAAAGATCGTTCAAGGATACAAGTTCAACATCTTCTACCCGGACCTGGTGGACAAGACCAAGGCTCCGGCCTACACGATTGACAAGGAT GGAAGCAACGACGAGACATGCATCATCAGGTTCCATGCTGGACCGCCTTACGAGGATATCGCGTTCCGGATAGTGAACAAGGAGTGGGAGTACTCTCACA AGAAGGGGTTCAAGTGCACGTTCGAGCGCGGGATTCTGCATGTCTACTTCAACTTCAAACGCCACCGCTACCGGCGGTAA
AA sequence Show only first row Show all	>Lus10027731 pacid=23157075 polypeptide=Lus10027731 locus=Lus10027731.g ID=Lus10027731.BGIv1.0 annot-version=v1.0 MGSRNKRDRKRKLEEEESESSVSESEDSDSSPQRRSKSRRERSSHGRSRSSHSRKGSSSDSGSDSDDRRKKKKSSRKITDDEIAEYMAKKAQRKAMKVAK KLKGQTVSGYSNDSNPFGDSNLNEKFVWRKKIEKDVYQGAPLDDFSIKAERKKQKERMAEIEKVKKRREERALGKAQHEEEMALLARERARAEFQDLEKK EDEFHYEQSKFRSEIRLREGRVKPIDVLTKHLNVSDDLDIEINEPYMVFKGLTVKEMEELHDDIKMHLEMERTTQTHVDYWEALLVVCNWELSEARKKDA LDRARVRGEEPPAELLAEDRGMHAGIEADVRDLLEGKTSQELDASKSKIEELLSSGEARVVEYWQAVLKRLQIYKAKAILKEIHAKMLRTHLKRLEPTLE AEDKWDSGNELKPIEEESEPEEKEDLEPVHREPVEETQEAEEEAGSFSPELLHGDEDKEEAVDPEEDKALLEKKRTAVLEEQQRRIREAMASKPPLPPAD NFEMKAIKVMGVMEEGDAVFGSGAEVNLDSAVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPAYTIDKD GSNDETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03910			unknown protein		Lus10027731 [exp]	0	1
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	1.4	0.7533
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	2.8	0.7465
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10012707 [exp]	4.5	0.6831
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	6.0	0.7110
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	7.7	0.7109
AT2G44200			CBF1-interacting co-repressor ...		Lus10039128 [exp]	7.9	0.7442
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	18.6	0.7269
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	19.0	0.6468
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	20.3	0.7307
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	24.1	0.7174

Compare expression of checked genes

Lus10027731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.