Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36670 590 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 523 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) AT3G02740 281 / 2e-89 Eukaryotic aspartyl protease family protein (.1) AT5G36260 279 / 2e-88 Eukaryotic aspartyl protease family protein (.1) AT1G05840 267 / 7e-84 Eukaryotic aspartyl protease family protein (.1) AT1G65240 256 / 6e-80 Eukaryotic aspartyl protease family protein (.1) AT3G42550 218 / 8e-66 Eukaryotic aspartyl protease family protein (.1) AT5G43100 153 / 3e-40 Eukaryotic aspartyl protease family protein (.1) AT3G50050 130 / 3e-32 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035556 [exp] 798 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 663 / 0 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 502 / 3e-175 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 493 / 9e-172 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 287 / 1e-91 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 283 / 6e-90 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 282 / 1e-89 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 281 / 2e-89 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 259 / 1e-80 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118800 [exp] 654 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 634 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 541 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 531 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 284 / 3e-90 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 262 / 8e-82 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 152 / 1e-39 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 149 / 7e-39 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 127 / 3e-31 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 117 / 2e-28 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10027732 pacid=23156962 polypeptide=Lus10027732 locus=Lus10027732.g ID=Lus10027732.BGIv1.0 annot-version=v1.0 ATGCGCCCTTCTTGGTCGCCGACGTTGCTGATAACAACACTCCTCGTTCTTCTCTCGCTGGCGGCAGCTAACAACAGTCTCGGCCTTCTCCACCTGGAGA GAGCTTTCCCGTTGAATTACACCGTCGATATCGAGCAACTCAGAGCTTGGGACAGAGCTAGGCACTCCAGGCTCTTGCAAGGATTCGTCGGCGGCGTAGT CGACTTCTCCGTCCAAGGCTCCCCCGATCCTTACCTCGTCGGGCTTTACTTCACAAAGGTGAAACTAGGTTCTCCTCCTAGAGAGTTCAACGTGCAGATT GATACTGGGAGTGATGTGTTGTGGGTTAACTGTAACTCCTGCGAGAATTGTCCACGCTCCAGTGGTCTTGGGATTCAGCTAAATTTCTTTGATTCTGCTA GCTCGTCAACAACTGGGCCGGTTCCTTGTGCGGATCCAGTATGTGTGGCAGCGGCTCGAACCAGCGTGACTCAGTGTTCGGAGAGGGGTCAGTGTGCCTA CACGTTCCAGTATGGAGATGGGAGTGGAACCTCGGGTGTTTATGTGACAGATACGTTTCATTTGGATTCGATTTTGACTGGATCGATGATTGTTAACTCG TCAGCTGTTATCGTATTTGGTTGTAGCAGCTACCAATCTGGTGACTTGACCAAGACCGACAAAGCAGTTGATGGAATTTTCGGATTTGGCCAAGGATCTC TCTCTGTTATATCGCAATTATCATCCAGGGGGATTACGCCTAGAGTTTTCTCTCATTGCTTGAAAGGAGAGGGCAGTGGAGGTGGCACATTTGTTCTTGG GGAGATTTTGGAGCCAGGAATCATCTACACTTCACTCGTCCCGTCACAGGCTCATTACAATTTATATCTACAGAGCATTACCGTCAATGGACAGATGTTA CCTGTTGATCCAGTGGCCTTCTCGACATCAACTAACCGAGGAACGATTGTCGACACTGGAACCACTTTGGCATACCTTGTCGAAGAAGCTTATGATCCAT TTGTCGGCGCGGTTACTGCTGCCGTCTCACAATCCGTGACTCCCACCATAAATAAGGGAACCCAGTGTTACCTCGTCAGTTCCAGTGTGTCTAGTCTATT TCCTCCAGTTAGCTTCAATTTCGTAGGCGGTGCTTCTATGGTGTTAAAACCGGAGGAGTACCTCGTTGAACAAGGTTCCTATCAGGATGGCGGTGGAATG TGGTGCATTGGTTTCCAGAAGGGTCAGGGACTAACCATTTTAGGAGATCTTGTTCTTAAAGACAAGATTTTTGTCTACGATTTAGTCCATCAGCGAATCG GGTGGGCTAACTACGACTGCTCGTTATCGGTAAACGTGTCTGTAACTTCTAGCAAAGATTTTGTCAATGCCGGACAGGTGAGTGCAAGTAGCTCTTTTCG AGACATGCTCTTGCAGCTGGTCTTCTTGCACATATCAGCATTGGTGTGCATCGAGTTTTTTGTAGTTTAA
AA sequence Show only first row Show all	>Lus10027732 pacid=23156962 polypeptide=Lus10027732 locus=Lus10027732.g ID=Lus10027732.BGIv1.0 annot-version=v1.0 MRPSWSPTLLITTLLVLLSLAAANNSLGLLHLERAFPLNYTVDIEQLRAWDRARHSRLLQGFVGGVVDFSVQGSPDPYLVGLYFTKVKLGSPPREFNVQI DTGSDVLWVNCNSCENCPRSSGLGIQLNFFDSASSSTTGPVPCADPVCVAAARTSVTQCSERGQCAYTFQYGDGSGTSGVYVTDTFHLDSILTGSMIVNS SAVIVFGCSSYQSGDLTKTDKAVDGIFGFGQGSLSVISQLSSRGITPRVFSHCLKGEGSGGGTFVLGEILEPGIIYTSLVPSQAHYNLYLQSITVNGQML PVDPVAFSTSTNRGTIVDTGTTLAYLVEEAYDPFVGAVTAAVSQSVTPTINKGTQCYLVSSSVSSLFPPVSFNFVGGASMVLKPEEYLVEQGSYQDGGGM WCIGFQKGQGLTILGDLVLKDKIFVYDLVHQRIGWANYDCSLSVNVSVTSSKDFVNAGQVSASSSFRDMLLQLVFLHISALVCIEFFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36670			Eukaryotic aspartyl protease f...		Lus10027732 [exp]	0	1
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	3.7	0.8881
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	6.6	0.8948
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	10.1	0.9039
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	11.8	0.8987
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	12.0	0.8808
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	13.4	0.8876
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043116 [exp]	15.0	0.8309
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	18.3	0.8966
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	18.6	0.8975
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	20.6	0.8961

Compare expression of checked genes

Lus10027732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.