Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36660 535 / 0 PAB7 poly(A) binding protein 7 (.1) AT1G22760 424 / 4e-140 PAB3 poly(A) binding protein 3 (.1) AT2G23350 419 / 5e-138 PABP4, PAB4 poly(A) binding protein 4 (.1) AT4G34110 417 / 5e-138 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 416 / 6e-137 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 413 / 2e-135 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT3G16380 341 / 1e-109 PAB6 poly(A) binding protein 6 (.1) AT1G34140 265 / 3e-82 PAB1 poly(A) binding protein 1 (.1) AT5G19350 108 / 4e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17370 103 / 2e-23 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035556 [exp] 1056 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014392 [exp] 897 / 0 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 878 / 0 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10010042 [exp] 427 / 2e-141 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 422 / 3e-139 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 395 / 4e-129 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 390 / 7e-127 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10021396 [exp] 341 / 3e-109 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10041728 [exp] 108 / 3e-25 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025400 [exp] 405 / 4e-133 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 400 / 8e-131 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 395 / 3e-129 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 341 / 3e-109 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.014G034600 [exp] 111 / 7e-26 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.007G028300 [exp] 108 / 2e-25 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 108 / 7e-25 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 106 / 2e-24 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G139300 [exp] 103 / 2e-23 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.009G105300 [exp] 101 / 1e-22 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10027733 pacid=23157047 polypeptide=Lus10027733 locus=Lus10027733.g ID=Lus10027733.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCAGCAGCAGATTCGGCGGCTACCGCGACGACGACGACCGTAGCCGGAGCGTCTCTGTACGTTGGAGACCTGCACCCTGACGTCGACGACA AGCAACTATTCCAGGCGTTTGGAGAGTTCAAGAGCATTTCATCGGTCCGCGTGTGTCGAGACTCCCCTACCGGGAGGTCTCTCTGTTACGGCTACGTAAA CTTCATCGTCCCGGAAGATGCTGTGAAAGCTATGGAGACGAAGAACCACACCCTTTTGAATGGGAAAGCGATGAGGGTTTCGTGGTCACACCGCGATCCT GATGCAAGAAAAAGTGGAGTAGGAAATGTGTTTGTCAAGAATTTGAGTGAATCTGTTACTAATGTTGCACTGCAAGAGCTGTTCGGCAAACATGGGAATA TCGTGTCTTGCAAAATAGCGACCTTTGATGATGGGAGGACTAAAGGCCATGGCTTTGTCCAGTTTGATAACGAGGCATCTGCAAATTCTGCTATTGAAAA GCTGAATGGCTCAATGTTTTATGATAAACAGATATATGTTGGAAAGTTTATTAAGAGAAGTGATCGAGCTTTACCCAGCCCTGATGCTAAATACACTAAT CTATATGTCAAGAACTTGGAACTAAAAGTCACGGAAGAGCTTCTACATGAGAAATTCTCCAAGTATGGGATCGTGTCAAGCTTGGTTATCGCTAAGGATG ACAATGGATCCTCTAGGGGTTTTGGCTTTGTGAATTTTGATGATGCTGATGATGCTAAGCGTGCTGTGGAAGCAATGAATGGGATTGAGCTTGGATCGAA GATTCTATTTGTAGGAAGGGCACAGAAGAAAGCTGAGCGAGAGCAGATTCTGCGCCGTCAGTTTGAAGAAAAACGCATGCAGCAGATTCAGAAGTACAAG GGTTCAAATGTGTATGTTAAGAACATTGATGATGATGTCACTGATGAAGAGCTGACAGACCACTTCAGCCAGTGTGGCACAATTACATCCTCAAAGCTTA TGAGGGACGAAAAAGGTATTAGTAAGGGATTTGGCTTTGTCTGCTTCTCCAATTCCGTGGAGGCGAATAAAGCAGTTACCACATTTCATGGGTACATGCT TCGCCGGAAGCCACTGTATGTGGCTATTGCTCAAAGGAAGGAAGATAGACAAGCCCAACTACACATGCAGTATGCACAACGCCTGGTTGGACTACCTGGA CCTTCAACTGCTGTTATCCCCGCTGGATATCATCCACTCTATTATACAGGTCCACAGGGCCTTGTTTCGCAAGTACCTCCCCGACCTGGACTTATGTACC CGCCTTTGGGCATTCGGCCAGGATGGAGAGCTAATGGCTTCGCTCCTCCAGCCAGACCAGTGTTTCAACCTGGTCAACTTCCTATGATGCCTCATGCTCA AAGGCAACAAAGGCAAACCCGGGGTAGGATGAACGGAAACATGCTTCCTCATGGCAATGCCTCCTATATGCAGCCTGCTCCTCAACCTCTACCTTCCCCG AAAGATCAAAACAACCAGCTTGCTTCTCAGGCTAAGTATGTTCCAAATGGCCGTTCCCGCGAGCTAACCAAATCAGTTGGCATATCATCACCTACTCTGG TTTCCACATTGCCGCCTAGTCCCTTAGGAGTAGACATGCTGAGCACCATGCTTGCTGCTTCTTCCCCTGATCTTCAGAAACAAATCCTCGGGGAGCGCCT CTACCCTTGCGTTGAGTTGTACAACGCTGAGCAGACTGCAAAGATAACTGGAATGCTGCTGGAGATGGACAATTCAGAGCTATTGCTGTTGCTGGAAACA CCAAAATCGTTGGAAGCCAAGGTGAACGAAGCTGTTCAAGTGCTTAAGCTCTCCGAAGCTTCTGCTTCAGCTAAAGCATCCTCCGCCCCCTCCGGCAGCC AAGATAACACCACCACCACCGGGATGCATTCTTCTTCCGCCAAGTACCATCTCTCTGCCGAGGTTGCTGTCAACTGA
AA sequence Show only first row Show all	>Lus10027733 pacid=23157047 polypeptide=Lus10027733 locus=Lus10027733.g ID=Lus10027733.BGIv1.0 annot-version=v1.0 MAVAAADSAATATTTTVAGASLYVGDLHPDVDDKQLFQAFGEFKSISSVRVCRDSPTGRSLCYGYVNFIVPEDAVKAMETKNHTLLNGKAMRVSWSHRDP DARKSGVGNVFVKNLSESVTNVALQELFGKHGNIVSCKIATFDDGRTKGHGFVQFDNEASANSAIEKLNGSMFYDKQIYVGKFIKRSDRALPSPDAKYTN LYVKNLELKVTEELLHEKFSKYGIVSSLVIAKDDNGSSRGFGFVNFDDADDAKRAVEAMNGIELGSKILFVGRAQKKAEREQILRRQFEEKRMQQIQKYK GSNVYVKNIDDDVTDEELTDHFSQCGTITSSKLMRDEKGISKGFGFVCFSNSVEANKAVTTFHGYMLRRKPLYVAIAQRKEDRQAQLHMQYAQRLVGLPG PSTAVIPAGYHPLYYTGPQGLVSQVPPRPGLMYPPLGIRPGWRANGFAPPARPVFQPGQLPMMPHAQRQQRQTRGRMNGNMLPHGNASYMQPAPQPLPSP KDQNNQLASQAKYVPNGRSRELTKSVGISSPTLVSTLPPSPLGVDMLSTMLAASSPDLQKQILGERLYPCVELYNAEQTAKITGMLLEMDNSELLLLLET PKSLEAKVNEAVQVLKLSEASASAKASSAPSGSQDNTTTTGMHSSSAKYHLSAEVAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	0	1
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	1.0	0.9056
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10023884 [exp]	6.5	0.8405
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	9.2	0.8002
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	13.1	0.8220
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	13.6	0.8304
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	18.0	0.8072
AT4G14820			Pentatricopeptide repeat (PPR)...		Lus10022093 [exp]	19.2	0.7493
AT3G16780			Ribosomal protein L19e family ...		Lus10038418 [exp]	20.8	0.8100
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	21.3	0.7888
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10032186 [exp]	37.3	0.7670

Compare expression of checked genes

Lus10027733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.