Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27920 456 / 2e-158 SCPL51 serine carboxypeptidase-like 51 (.1.2.3) AT5G22980 106 / 1e-24 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G45010 100 / 2e-22 SCPL48 serine carboxypeptidase-like 48 (.1) AT1G15000 85 / 1e-17 SCPL50 serine carboxypeptidase-like 50 (.1) AT3G10410 70 / 2e-12 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT5G42240 66 / 2e-11 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G22960 62 / 4e-11 alpha/beta-Hydrolases superfamily protein (.1) AT3G52010 64 / 7e-11 SCPL37 serine carboxypeptidase-like 37 (.1) AT4G12910 62 / 4e-10 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G07990 61 / 1e-09 SCPL27 serine carboxypeptidase-like 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035555 [exp] 756 / 0 AT2G27920 492 / 1e-172 serine carboxypeptidase-like 51 (.1.2.3) Lus10041352 [exp] 477 / 1e-166 AT2G27920 567 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10036578 [exp] 467 / 2e-162 AT2G27920 565 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Lus10042334 [exp] 99 / 3e-22 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 93 / 4e-20 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 82 / 1e-16 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1) Lus10036016 [exp] 68 / 5e-12 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10016722 [exp] 67 / 1e-11 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10037958 [exp] 67 / 1e-11 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119300 [exp] 547 / 0 AT2G27920 515 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.009G003100 [exp] 507 / 5e-178 AT2G27920 589 / 0.0 serine carboxypeptidase-like 51 (.1.2.3) Potri.008G129800 [exp] 102 / 1e-23 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 102 / 3e-23 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 99 / 3e-22 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.002G071800 [exp] 69 / 3e-12 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.004G215400 [exp] 68 / 5e-12 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.012G105500 [exp] 67 / 9e-12 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.008G034800 [exp] 67 / 1e-11 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 66 / 3e-11 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10027734 pacid=23156954 polypeptide=Lus10027734 locus=Lus10027734.g ID=Lus10027734.BGIv1.0 annot-version=v1.0 ATGGGGAAACTTAGCTGTGTTCATCTAGTTATTCCTCTCCTACTTCTTCAATGGAGTTCACCTTTTGTCTCAGCCGGCTCATCCTCCGGTGGAACCGAAG ATGGTTCCGAACAATGGGGCTACGTCGAGGTTCGACCAAGGGCACATTTGTTTTGGTGGCTTTACAAGAGCCCAAACAGAGTTGAAGATCCTTCATCTCC ATGGCCTACAATTCTATGGCTCCAAGGAGGCCCTGGAGGCTCGGGCGTTGGATTCGGTAATTTCCTCGAGCTAGGACCTCTTGACGGAAACTTACAACCT CGAAATTTCACGTGGCTGCGAAAAGCCGACCTACTGTTCGTGGATAGTCCGGTTGCTACAGGATTCAGCTACGTGGAGGACGAATCGTTGGTAGTTAGAA CCGACTACGAGTCAGCAACTGATTTAACTACCTTGTTGAAGGCATTGTACAATGACAATGATGCCCTCCAGAAGAGCCCTCTCTATATCTTTGCCGAGTC TTATGGAGGAAAATTTGCTGTCACCCTTGGAGTTACCGCAGTTAAAGCCATCGAAGCAGGAGAGTTAAGGCTCCAACTCGGAGGTGTCGCTCTGGGCGAT AGTTGGATTTCACCCGAACATTTTACGTCGTCGTGGGGGCCTCTTTTGAAGCAAGTGTCGCGAATTAGTAACAATGGATTAAGCAAATCAAACAGTGTGG CTTTGAAGATCAAGCAGCAGCTGGCTGAAGGCCAGTATCAAAATGCAACAGATTCTTGGGGTGAACTTGAGAACGTTATCTCGGATTATAGCAACAATGT GGATATTTACAACTTCTTGTACGGCGGCGGGGATTCACCGGTTGCGGCGACGAACAAAGCTACGGCATCATCACGTGGTAGAAACGTTGCTGAAAAGTAC ACGACCGGATTAATTAGTATGAGCAAGAGATTACAATCTTCTTCATCGTCGTCGTCATCAATATTAGCCGATAAAGAGTCGATGAGTCTTGACGATTTGA TGAATGGGCCTATTCGGAAGAAGTTGAAGATAATCCCATCTAATGTCACATGGGGAGGGCAAGGTGAGTTGGTTTTCTCTGCTATGGAAGGAGATTTCAT GAAGCCTAGAATCAAAGAGGTCGATGAGCTCTTAGTGAAGAATATTAGTGTCACGATATACAATGGCCAGGTTGACGTAATTTGCTCAACACCAGGAGTA GAAGCTTGGGTTAACGAACTCAAGTGGGATGGTTTGCAAGAGTTCTTGAGTAAAGATCGAACCCCTTTATACTGCAATGGTGAAAATGCTACTACAAAGG CTTTCACAAGCTCTCACAGAAACTTGGATTTCTATTGGATTCTTTTGGCTGGCCATTTTGTGAGTTAA
AA sequence Show only first row Show all	>Lus10027734 pacid=23156954 polypeptide=Lus10027734 locus=Lus10027734.g ID=Lus10027734.BGIv1.0 annot-version=v1.0 MGKLSCVHLVIPLLLLQWSSPFVSAGSSSGGTEDGSEQWGYVEVRPRAHLFWWLYKSPNRVEDPSSPWPTILWLQGGPGGSGVGFGNFLELGPLDGNLQP RNFTWLRKADLLFVDSPVATGFSYVEDESLVVRTDYESATDLTTLLKALYNDNDALQKSPLYIFAESYGGKFAVTLGVTAVKAIEAGELRLQLGGVALGD SWISPEHFTSSWGPLLKQVSRISNNGLSKSNSVALKIKQQLAEGQYQNATDSWGELENVISDYSNNVDIYNFLYGGGDSPVAATNKATASSRGRNVAEKY TTGLISMSKRLQSSSSSSSSILADKESMSLDDLMNGPIRKKLKIIPSNVTWGGQGELVFSAMEGDFMKPRIKEVDELLVKNISVTIYNGQVDVICSTPGV EAWVNELKWDGLQEFLSKDRTPLYCNGENATTKAFTSSHRNLDFYWILLAGHFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10027734 [exp]	0	1

Compare expression of checked genes

Lus10027734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.