Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32700 210 / 7e-69 PLATZ transcription factor family protein (.1.2) AT1G21000 210 / 1e-68 PLATZ transcription factor family protein (.1.2) AT1G76590 207 / 1e-67 PLATZ transcription factor family protein (.1) AT2G27930 205 / 2e-67 PLATZ transcription factor family protein (.1) AT4G17900 196 / 2e-63 PLATZ transcription factor family protein (.1.2) AT1G43000 184 / 1e-58 PLATZ transcription factor family protein (.1) AT5G46710 167 / 4e-52 PLATZ transcription factor family protein (.1) AT1G31040 130 / 3e-37 PLATZ transcription factor family protein (.1) AT2G12646 120 / 2e-33 PLATZ transcription factor family protein (.1) AT3G60670 117 / 2e-32 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035554 [exp] 382 / 1e-136 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10014396 [exp] 246 / 4e-83 AT1G76590 202 / 7e-66 PLATZ transcription factor family protein (.1) Lus10023411 [exp] 215 / 4e-69 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 207 / 1e-67 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 202 / 2e-65 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 202 / 7e-65 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 198 / 9e-64 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 197 / 1e-63 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 198 / 2e-63 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119400 [exp] 286 / 5e-99 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 277 / 2e-95 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.001G212400 [exp] 277 / 2e-95 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 267 / 2e-91 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.005G259000 [exp] 211 / 4e-69 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 211 / 6e-69 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 206 / 5e-67 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 202 / 7e-66 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 201 / 5e-65 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 198 / 6e-64 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10027735 pacid=23157057 polypeptide=Lus10027735 locus=Lus10027735.g ID=Lus10027735.BGIv1.0 annot-version=v1.0 ATGTCGGTGCCGGCGTGGCTAGAGTCACTGCTGAGCACCGCCTTCTTCTCCGTCTGCCGGATTCACCGCGACGCCGCGAGGAGCGAATGCAATATGTTCT GTTTGGATTGCAGAGGAGATCCGTTCTGCTTCTATTGCCGCTCCTCCCGCCACAAGGACCACCAAGTAATACAGATTAGGAGATCTTCGTATCACGATGT GGTGAGAGTCGGTGAAATACAGAAGGTTCTGGACATCAGCGGAGTACAGACGTATGTGATAAACAGCGCGAGAGTGATGTTCTTGAACGAGCGGCCGCAG CCCAAGTCCGGCAAAGGAGTCGCTCATCTCTGTGAGATTTGTGGCCGGAGCTTGCTCGACACGTTTCGATTCTGCTCGTTGGGATGTAAGCTTGTAGGGA TAAAGAAGAATGGGAATGCTACATTCACCATGGGAGGAGGAGAACATCATCAAAATAGAGAAGCTCAAACAAGTGCATCATCACCATTAATGTCAACATC AAGAGAAGAAAACCAAGGAATGCGTCAAGGAACAACACAAGAAGAACAACAAGAAGAAGGAATCATGTACCCGCCAGCGACGCCACCGACTTCCAACGCA CGGCGAAGAAAAGGCATTCCCCATCGCGCACCTTTCTTTGCTTCCTAA
AA sequence Show only first row Show all	>Lus10027735 pacid=23157057 polypeptide=Lus10027735 locus=Lus10027735.g ID=Lus10027735.BGIv1.0 annot-version=v1.0 MSVPAWLESLLSTAFFSVCRIHRDAARSECNMFCLDCRGDPFCFYCRSSRHKDHQVIQIRRSSYHDVVRVGEIQKVLDISGVQTYVINSARVMFLNERPQ PKSGKGVAHLCEICGRSLLDTFRFCSLGCKLVGIKKNGNATFTMGGGEHHQNREAQTSASSPLMSTSREENQGMRQGTTQEEQQEEGIMYPPATPPTSNA RRRKGIPHRAPFFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	1.7	0.9137
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	4.5	0.9184
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	5.5	0.8948
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	5.5	0.9151
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	6.7	0.8959
					Lus10019304 [exp]	7.4	0.9073
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	10.2	0.8508
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	11.8	0.9098
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	13.7	0.8831
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	14.7	0.8805

Compare expression of checked genes

Lus10027735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.