Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17905 88 / 2e-21 ATL4H RING/U-box superfamily protein (.1) AT5G17600 79 / 9e-18 RING/U-box superfamily protein (.1) AT2G42360 76 / 2e-17 RING/U-box superfamily protein (.1) AT3G03550 77 / 3e-17 RING/U-box superfamily protein (.1) AT5G05280 75 / 3e-17 RING/U-box superfamily protein (.1) AT3G10910 74 / 7e-17 RING/U-box superfamily protein (.1) AT5G43420 76 / 1e-16 RING/U-box superfamily protein (.1) AT4G33565 76 / 1e-16 RING/U-box superfamily protein (.1) AT3G05200 75 / 3e-16 ATL6 RING/U-box superfamily protein (.1) AT5G10380 73 / 7e-16 ATRING1, RING1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035553 [exp] 147 / 3e-41 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10013618 [exp] 83 / 2e-19 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10040942 [exp] 78 / 2e-18 AT3G11110 109 / 1e-30 RING/U-box superfamily protein (.1) Lus10012745 [exp] 78 / 1e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10029037 [exp] 76 / 1e-17 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10016163 [exp] 72 / 9e-16 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10006787 [exp] 72 / 1e-15 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10024405 [exp] 71 / 1e-15 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10033515 [exp] 72 / 2e-15 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043900 [exp] 90 / 3e-22 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 82 / 4e-20 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 85 / 5e-20 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 81 / 2e-19 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 81 / 2e-18 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 77 / 5e-18 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 78 / 2e-17 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 77 / 3e-17 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 75 / 3e-17 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 74 / 5e-17 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10027736 pacid=23157021 polypeptide=Lus10027736 locus=Lus10027736.g ID=Lus10027736.BGIv1.0 annot-version=v1.0 ATGGATGACACCCAGCAGCTGGACAATAACCCAACGACGACGCCGTCTTCTCATCCTTCTTCTTCACCGTCTTCCGTCATCACGCCGTTACTGATCTCTG CCGCAGGCGTCACTGGTACGTTCCTGATTATATTTGCATACCACATCTTGATCACCAGATGCTGTTCCCGGCGTCCTCCCTCCGGCGGTGGAGCAGCAAG GGAGAAAGTGGTGAGGGGGATCCCGGCGGTGTTGTTCTACTCGGAGGGAGATAATGGCGGGTTGACAGCGACGACTCCGTCAGATGGGAAGGACAAGAAG GTCAACGACTGCGTGATTTGTATAGGGGAGTTGGAAGAAGGCGAAACTGTGCGTTTCATGCCCAGGTGTCGACACGTGTTCCATGCTGCCTGCGTGGACC ACTGGCTGTTGGCCCACTCCAGCTGTCCCATGTGTCGTGCTCCAATTGTTTCACCTTGTGATGATGCGGCGTCTGCTTGCTGA
AA sequence Show only first row Show all	>Lus10027736 pacid=23157021 polypeptide=Lus10027736 locus=Lus10027736.g ID=Lus10027736.BGIv1.0 annot-version=v1.0 MDDTQQLDNNPTTTPSSHPSSSPSSVITPLLISAAGVTGTFLIIFAYHILITRCCSRRPPSGGGAAREKVVRGIPAVLFYSEGDNGGLTATTPSDGKDKK VNDCVICIGELEEGETVRFMPRCRHVFHAACVDHWLLAHSSCPMCRAPIVSPCDDAASAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10027736 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	1.0	0.9573
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	5.9	0.8925
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10041280 [exp]	6.0	0.8994
					Lus10004442 [exp]	13.0	0.9109
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	16.8	0.9295
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	16.9	0.8725
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	19.0	0.8815
AT3G53400			unknown protein		Lus10026502 [exp]	19.9	0.9210
AT3G53400			unknown protein		Lus10019932 [exp]	21.3	0.9124
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	25.0	0.9044

Compare expression of checked genes

Lus10027736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.