Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36710 425 / 1e-147 Pectin lyase-like superfamily protein (.1) AT2G36700 352 / 5e-120 Pectin lyase-like superfamily protein (.1) AT1G05310 349 / 6e-118 Pectin lyase-like superfamily protein (.1) AT5G19730 291 / 1e-95 Pectin lyase-like superfamily protein (.1) AT5G47500 273 / 1e-88 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G55590 250 / 1e-79 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT3G17060 237 / 7e-75 Pectin lyase-like superfamily protein (.1) AT2G21610 236 / 2e-74 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07430 233 / 4e-73 Pectin lyase-like superfamily protein (.1) AT5G07420 228 / 4e-71 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010470 [exp] 345 / 6e-116 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 290 / 5e-95 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 287 / 1e-94 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 284 / 1e-92 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 280 / 2e-91 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 275 / 3e-89 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 275 / 4e-89 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10035553 [exp] 268 / 4e-80 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10009997 [exp] 251 / 4e-80 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120100 [exp] 498 / 2e-176 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 353 / 2e-119 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 295 / 4e-97 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 281 / 6e-92 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 276 / 1e-89 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 253 / 7e-81 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 253 / 1e-80 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 251 / 2e-79 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 246 / 1e-78 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.008G104800 [exp] 243 / 3e-77 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10027737 pacid=23156894 polypeptide=Lus10027737 locus=Lus10027737.g ID=Lus10027737.BGIv1.0 annot-version=v1.0 ATGAAACTGCTGAATCAAACACCCACATTCTGGCTCTTTGCTTCCTCTTCTTTCATAGCCCTAATCTCTCTACTCTGCCTAATCCCACCTCCTCTTGATC TGCCTTCTTCTTATTTATCAACAACATTCCCAGATGGGTTTCTTCAGTTTGGCAGTTTTCTACCAACTTCTAAACACCATCATCATCACAGGAGAAGGCC AAAGGTGAAGTGTGAAGAGAACAAATGGAGGTCAAAGTTGATATACCTTTACCAAGTCTCACTTGTGTTGACCGTTGGCCAGAGAGGTTGTGCCAACTTC AGCTCTGTTCAGAAAGCCGTTGATGCTTCCCCTGACTTTGGATCCAACACTACCCTCATCCTGATCGATTCCGGGACCTACAGGGAAAAGGTGGTGGTCA ATGCAAACAAAACCAACTTGGTACTGGAAGGGCAAAACTATCTCAACACGGCCATTGAATGGAACGACACTGCCAATTCTACCGGCGGAACAATTTACAG CGCTTCCGTTGTCGTTTATGCCCCTAGTTTTACCGCCTACAACATCAGCTTCAAGAATTCAGCTCCGGCGCCTGCTCCGGGGGAGGTGGGAGCTCAGGCG GTGGCCATTCGGGTGGCCGGCGACCAAGCTGCTTTCTACAGATGTGGGTTTTATGGAGCTCAAGATACACTGCACGATGACCACGGGAGGCATTATTACA GAGGGTGTTTCATTCAAGGATCTATTGATTTCATCTTTGGTAATGCCAAGTCATTATTTGAGAGCTGCACAATCAACTCGATTGCAATCCCACCAACAAC AGATTCGGGAGCCACCGGCTCAATCACAGCTCAGGCGAGGCAATCCTCCGGTGAGGACACCGGCTTTTCCTTCGTCAATTCCAAGATAAACGGAACTGGA CAAGTGTGGCTAGGAAGAGCATGGGGAACTTACTCCACGGTCGTGTTCATTAGGACTTACATGTCGGATGCGGTCTCCCCTGACGGGTGGAACGATTGGA GAGACCCTTCTAGAGATCAGACGGTTCTCTTCGGAGAATATGACTGTTACGGCCCTGGAGCAAACAATTCGTCCAGGGTATCGTACGGCAGGCGGCTTAC GCAGGAAGAGGCGGCTTCGTTCATGGATATTTCTTACATCAATGGTGAGCAGTGGCTCCAAGATGGCCGCACTGTTCCAAGAGTTCCTGATTACAATGAT GGTGATGGTTGTGGTAATTATATATGGGGCAATGGAGATGTAGACCAAGAGTAG
AA sequence Show only first row Show all	>Lus10027737 pacid=23156894 polypeptide=Lus10027737 locus=Lus10027737.g ID=Lus10027737.BGIv1.0 annot-version=v1.0 MKLLNQTPTFWLFASSSFIALISLLCLIPPPLDLPSSYLSTTFPDGFLQFGSFLPTSKHHHHHRRRPKVKCEENKWRSKLIYLYQVSLVLTVGQRGCANF SSVQKAVDASPDFGSNTTLILIDSGTYREKVVVNANKTNLVLEGQNYLNTAIEWNDTANSTGGTIYSASVVVYAPSFTAYNISFKNSAPAPAPGEVGAQA VAIRVAGDQAAFYRCGFYGAQDTLHDDHGRHYYRGCFIQGSIDFIFGNAKSLFESCTINSIAIPPTTDSGATGSITAQARQSSGEDTGFSFVNSKINGTG QVWLGRAWGTYSTVVFIRTYMSDAVSPDGWNDWRDPSRDQTVLFGEYDCYGPGANNSSRVSYGRRLTQEEAASFMDISYINGEQWLQDGRTVPRVPDYND GDGCGNYIWGNGDVDQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	0	1
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	1.0	0.8941
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	2.4	0.8412
AT5G14680			Adenine nucleotide alpha hydro...		Lus10008772 [exp]	3.7	0.7958
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	4.2	0.8196
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	4.5	0.8679
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	6.3	0.8249
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	8.8	0.8319
AT2G36220			unknown protein		Lus10022709 [exp]	9.4	0.8055
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	12.0	0.7980
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	13.7	0.7674

Compare expression of checked genes

Lus10027737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.