Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36720 783 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 632 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 520 / 1e-171 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 499 / 2e-163 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 166 / 9e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 161 / 2e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 152 / 3e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 108 / 7e-24 PHD finger transcription factor, putative (.1) AT5G63900 100 / 1e-21 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G36740 95 / 2e-19 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035553 [exp] 1579 / 0 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 479 / 2e-155 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 478 / 8e-155 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 372 / 1e-113 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042283 [exp] 178 / 2e-45 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10006110 [exp] 175 / 2e-44 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 169 / 1e-42 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10010562 [exp] 167 / 8e-42 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10012522 [exp] 150 / 9e-38 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120200 [exp] 1075 / 0 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 1063 / 0 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 677 / 0 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 599 / 0 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 546 / 0 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.005G211100 [exp] 170 / 6e-43 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 167 / 5e-42 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G118600 [exp] 162 / 6e-41 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.008G152600 [exp] 162 / 2e-40 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 150 / 7e-37 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10027738 pacid=23156979 polypeptide=Lus10027738 locus=Lus10027738.g ID=Lus10027738.BGIv1.0 annot-version=v1.0 ATGGCGCTGGCTGATTCGTTGTCGGAGGTTCTTCACTCTCAGCTGGCTACTACTTCCACTGCTGCTGCTGCTGCTGCTAGTCTGCTCACTCAGCCTCCGA GCTCGGAGATAACGGAGCTCGAAGAGGAGTTTGGAGCTGCTAAGGTAAACGGTTTCTTCGTCTATTCCCGCGTTAAGAAGAGTGGTAGAGCTAGAGATGA CGATGAGATTGCTGCCGACGACGACGGCTGTGAGAGCAAGAGGATTAGGTGCTTAGAGTTGGAGAATGGAGAGGTAGCTAGGTGTAATGGAGAGGCATCG ATTTGGAAAGACGAGGTGAAGTGTGAATCGACGGTGGAAGGAGGACCAGGCAATGGGAATTTACGGATCCGTATTCGTAAAGGTAATAAGGTGAATAGGA GTGAGATGAGGAAGTTTACGCGGTCGGCTATCAAGCTTAATGTAGAGTCGGAGGTGGAGGTCAATGTGACCGGTGTGGAATCCGTCGGTAGCGGATCGAT TTCGACAGTGAATGTTGAGGTGATTGGCTCGGAAGGAACTGCTCCAGTAGTAGCGCCGCCGAAGAAGAATTTGGAGATGAAGATGTCCAAGAAGATTTCA CTTCGTAGTGTGCCGATGACGGTGAAGGAGCTCTTTGAAACTGGCTTGCTGGAAGGAGTTCCAGTTGTTTACATGGGTGGGAGGAAGTTTGAAGCATTTA CTCTAAGGGGAATGATTAAGGATGTAGGGATTCTGTGTGCTTGTGCTCTCTGCAATGGAGTTAGAGTTATTCCACCGTCCCAATTTGAGATACATGCCAT CAACCAATACCGGCGAGCATCACAATACATTTGTTTCGAGAATGGCAAGAGCCTGCTCGATGTATTGGATGCGTGCAGGTATTCACCTCTTGATTCTTTA GAAGCAACCATTCAAGATGCCATTAGTGGTAGCCCTCAAGAAAAAACTTTCACCTGTAGAAGATGTAAAGGCTCTTTTCCTGCAACTTGTGTTGGCAAAA TAGGCCCACTTTGTAGTTCATGTACCAAAGCAAAGTCTAAGAATCCAAGTTCTTCCTGGTCTTTTGTTACAGCGGTTAGCTCTACTGAAGCTGCTCTTAC CTCAGAGTCTTCTAGAAGTGCTCTGATTTCGACACCCTCACAAGAGCTCACTCCAAGCAAGAGAACCAGAAAGTTGAGTATCAGGTTCAAACTTAAAACG ATCAATGAGTACCCCAGTCAACACATCGTCGAGAAAAAAGAGCCAATTGAAGATAACTCCAAAGTTGGTTCCATGTTAGTTGTCTGCTTCCTTATGGCCA ACAAGCTAATCGTTTCGTTTCTTGTTTCCCGAAGAGATCAGAGGTTGCACAGAATGGTCTTCGAGGAAGGTGGATTGCCTGATGGGACAGAAGTGGGATA CTATGCACGTGGCAAGAGATTACTTGCTGGTTATAAGCGTGGCTCTGGAATACTCTGTCATTGCTGTAATAGTGAGGTCAGCCCATCAACCTTTGAAGTT CATGCTGGTTGGGCTACTCGGAAGAAGCCATATTCATACATTTACACATCCAATGGTGTGTCACTCCATGAACTGGCACTATCTCTCTCCAAGAGTCGCA AGTACTCCGCGAAGGATAATGATGACCTCTGCATAGTCTGTGCAGATGGTGGTAATCTCGTGCTCTGTGATGGATGCCCCCGGGCCTTTCATAAAGGATG TGCATCTTTGCCGAGTATTCCTCGCGGTGACTGGTACTGCAATTATTGTGAGAGTATGTTTGAGAAAGAAAGGTTCGCTGAGCAGAATGCCGATGCTGTT GCTGCTGGACGGATGCCTGGAGTTGATCCAATAGAAGAAATAACCCTCAGATGCATGCGTATTGTAAAAAACATAGAAGCTGAACTAAGCGGATGCGTGT TATGCAGAGGTCACGATTTCAGCAGATCCGGGTTTGGTCCACGTACAATCATACTCTGCGATCAGTGCGAGAAAGAATATCACGTTGGCTGCTTGAGGAG TCACAAAATGGCAAATCTTAAGGAATTGCCACTAGGAAAATGGTTCTGTTGCATGGAGTGTAGTACGATCCATTCATCTCTGCAGAATCGACTAAGTCGT GGTGCCGAGAAGCTCCCAGACTCGGATTTGAATGTCCTAAAGAATAAGGATCCCGAGAAAGGCTTGGGAACTGCTGACAACATCGACATCAGATGGCGAT TGGTCAGCGGGAAAGTTTCTGCCCCTGAGAATAAGCTGTTACTTTCTCAAGCTTTGGCGATCTTCCAGGAATGTTTCGATCCCATAGTAGATATAGCAAC CGGCCGCGATCTGATTCCTCTAATGGTGTACGGTAAGAACTCCAAAGGCCAAGACTATGGAGGAATGTACTGTGCAGTACTAACAGTCAACTCTTTTGTT GTGTCTGCGGGAATGTTGAGGGTTTTCGGGCAAGAAGTTGCCGAGCTTCCTCTAGTTGCAACCAGTAAAACTAACCACGGCAAGGGCTACTTCCTGCTGC TTTTCTCCTGCATCGAGAACCTGCTATCGACTCTCAACATTCCGAGCCTTGTGCTCCCAGCTGCCCATGAGGCTGAATCAATATGGACGAACAAGTTCGG TTTCGAGAGAATCGACTTAGACCAGCTTACCAAGTACAGAAAAAACTGCTGCCAGATCGTGTCCTTCGAAGGAACCTCGATGCTTCATAAAGCAGTCCCC CTCAGAATTGTTGACCAAATTAGTGAAGATATTGTTGTTGATACAGAAGAAGCAGGATGA
AA sequence Show only first row Show all	>Lus10027738 pacid=23156979 polypeptide=Lus10027738 locus=Lus10027738.g ID=Lus10027738.BGIv1.0 annot-version=v1.0 MALADSLSEVLHSQLATTSTAAAAAASLLTQPPSSEITELEEEFGAAKVNGFFVYSRVKKSGRARDDDEIAADDDGCESKRIRCLELENGEVARCNGEAS IWKDEVKCESTVEGGPGNGNLRIRIRKGNKVNRSEMRKFTRSAIKLNVESEVEVNVTGVESVGSGSISTVNVEVIGSEGTAPVVAPPKKNLEMKMSKKIS LRSVPMTVKELFETGLLEGVPVVYMGGRKFEAFTLRGMIKDVGILCACALCNGVRVIPPSQFEIHAINQYRRASQYICFENGKSLLDVLDACRYSPLDSL EATIQDAISGSPQEKTFTCRRCKGSFPATCVGKIGPLCSSCTKAKSKNPSSSWSFVTAVSSTEAALTSESSRSALISTPSQELTPSKRTRKLSIRFKLKT INEYPSQHIVEKKEPIEDNSKVGSMLVVCFLMANKLIVSFLVSRRDQRLHRMVFEEGGLPDGTEVGYYARGKRLLAGYKRGSGILCHCCNSEVSPSTFEV HAGWATRKKPYSYIYTSNGVSLHELALSLSKSRKYSAKDNDDLCIVCADGGNLVLCDGCPRAFHKGCASLPSIPRGDWYCNYCESMFEKERFAEQNADAV AAGRMPGVDPIEEITLRCMRIVKNIEAELSGCVLCRGHDFSRSGFGPRTIILCDQCEKEYHVGCLRSHKMANLKELPLGKWFCCMECSTIHSSLQNRLSR GAEKLPDSDLNVLKNKDPEKGLGTADNIDIRWRLVSGKVSAPENKLLLSQALAIFQECFDPIVDIATGRDLIPLMVYGKNSKGQDYGGMYCAVLTVNSFV VSAGMLRVFGQEVAELPLVATSKTNHGKGYFLLLFSCIENLLSTLNIPSLVLPAAHEAESIWTNKFGFERIDLDQLTKYRKNCCQIVSFEGTSMLHKAVP LRIVDQISEDIVVDTEEAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	1.7	0.9325
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	3.2	0.8920
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	3.5	0.9142
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	4.9	0.8942
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	6.9	0.8679
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	6.9	0.9163
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	7.0	0.9013
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	7.2	0.9119
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10013852 [exp]	8.4	0.8841
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	8.8	0.8665

Compare expression of checked genes

Lus10027738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.