Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03090 265 / 2e-89 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G02260 265 / 4e-89 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G40610 262 / 2e-88 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G56320 261 / 5e-88 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 261 / 1e-87 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 258 / 1e-86 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G37640 258 / 2e-86 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G39700 253 / 8e-85 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 251 / 1e-83 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G28950 236 / 5e-78 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014406 [exp] 298 / 2e-101 AT3G55500 304 / 7e-104 EXPANSIN 16, expansin A16 (.1) Lus10008603 [exp] 272 / 6e-92 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10034227 [exp] 265 / 2e-89 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 265 / 4e-89 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10026614 [exp] 259 / 8e-87 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 257 / 3e-86 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 257 / 3e-86 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10029038 [exp] 257 / 5e-86 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040801 [exp] 251 / 6e-84 AT2G39700 456 / 1e-164 expansin A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097500 [exp] 315 / 1e-108 AT2G39700 301 / 6e-103 expansin A4 (.1) Potri.016G098700 [exp] 303 / 1e-103 AT2G39700 283 / 4e-96 expansin A4 (.1) Potri.010G167200 [exp] 262 / 6e-88 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 259 / 4e-87 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.009G031800 [exp] 257 / 3e-86 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 257 / 4e-86 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.001G001100 [exp] 256 / 7e-86 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 255 / 2e-85 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G086100 [exp] 255 / 2e-85 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.006G108000 [exp] 254 / 3e-85 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10027740 pacid=23157085 polypeptide=Lus10027740 locus=Lus10027740.g ID=Lus10027740.BGIv1.0 annot-version=v1.0 ATGAGGACCTCCTCGTTTCAGATCTCGACGTGGGTATCGCTGGCCTTAACCATCATGGTCGTTACCTTCTTTGCCGATGATTGCGTAGCTCACGACTGGA TGCGAGCCCACGCCACATTCTACGAAGGCGCCCCCTCCACTTTCGGAGGAGCATGTGACTTTAAAGACACGGAACAACTAGGGTATGGGATGAACACGGC AGCGGTGAGCAGCGCCTTGTTCAAGAAAGGCGAGACCTGCGGTGCGTGCTTCGAGTTGAGGTGTGTCGACGACCCGAAGTGGTGCAAGCTAGGGCAGCAG ACGCTCATAGTCACCGCCACCGATCACTGCCCGCCCAACCCTTCCCTCCCCAACGATGCGGGCGGTTGGTGCAATCCTCCCCTCGAGCACTTCGACATCG CCAAGCCAGCGTTCCACACATTGGCTGAGGAGAAGAGTGGCATCATCCCCGTGGAGTATCGCCGGGTGCCTTGCCAGAAGCAAGGCGGGATGAAGTTTAG CTTTAGTGGCAACCCTTGGTTCATCCAGGTTGTGATATCGAATGTGGGTGGGGCGGGAGATGTGAAGGATGTGATGGTGAAGGAGGACGGCGCCATGTGT GAGTGGACGAAGATGGAGAGGGACTGGGGCGAGACCTGGAAAACCGACAACCACGAGCTGGTCGGAAAATGTTTGGGTTTCAAGGTGAGGACCAGCGACG GAAGGTCTGTTACTGCTACCAGTGTCACTCCCAAGGATTGGCAGTTTGGGCAGACTTATCAGAGCAGAGAGAACTTCTAG
AA sequence Show only first row Show all	>Lus10027740 pacid=23157085 polypeptide=Lus10027740 locus=Lus10027740.g ID=Lus10027740.BGIv1.0 annot-version=v1.0 MRTSSFQISTWVSLALTIMVVTFFADDCVAHDWMRAHATFYEGAPSTFGGACDFKDTEQLGYGMNTAAVSSALFKKGETCGACFELRCVDDPKWCKLGQQ TLIVTATDHCPPNPSLPNDAGGWCNPPLEHFDIAKPAFHTLAEEKSGIIPVEYRRVPCQKQGGMKFSFSGNPWFIQVVISNVGGAGDVKDVMVKEDGAMC EWTKMERDWGETWKTDNHELVGKCLGFKVRTSDGRSVTATSVTPKDWQFGQTYQSRENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10027740 [exp]	0	1

Compare expression of checked genes

Lus10027740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.