Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 369 / 7e-129 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 363 / 6e-127 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 364 / 5e-120 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009596 [exp] 323 / 1e-107 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10009595 [exp] 250 / 2e-82 AT1G79500 374 / 9e-132 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199100 [exp] 374 / 5e-131 AT1G79500 524 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.002G061900 [exp] 372 / 4e-130 AT1G79500 531 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00793 [flax] [poplar] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Lus10027741 pacid=23156890 polypeptide=Lus10027741 locus=Lus10027741.g ID=Lus10027741.BGIv1.0 annot-version=v1.0 ATGGAGGCGCAAGGGACAGAGCGGATATCGAGGGCAGCAAGATCTCTGGTTCCACCGTCATTGTTGTCGTGGCCAATGAAGGAGAGCCTCCTGGATGTTG TGGTGTTGGTGGCGTCTGGCGTTGCGCCCTGGGGTTGCGCTGCTGAGATTTCCACGTTCGCTTGGTTTGTGGTATGTTGTCCTCCGTCAGCAAAAGGGGA GAGGAGGGGGTCGATTGCGGGGTCGGGGGGTTCATGGCTAAAGTTGGTGATGACGACGAGTGAAGATGATGGTATCCTTGAGAAGGTGAAAGTAGCATAC GACTTGCCCATTGTCACTGACGTACATGAAAGCATCCAGTGTGAAGAAGTTGGTAAAGTTGCAGATATCATACAGATTCCTGCATTTCTCTGTCGCCAGA CAGACCTGCTTGTTGCGGCTGCCAAGACCGGGAAAATTATAAACATCAAGAAAGGCCAGTTCTGTGCTTCTAGTGTGGGGTCATGGAAAACTCAGCCGAG AAAGTTAAGACTGTCGGGAAACCCGAATGTGATGGTTTGTGAGAGAGGAACCATGTTTGGATACAATGATTTGATTGTTGATCCACGCAATCTTGAGTGG ATGAGAGAGGCTAATTGCCCTGTTGTTGCTGATATAACGCATTCTCTACAACAACCTGCTGGTAAAAAATTGGATGGTGGAGGAGTTGCCAGTGGAGGTC TCCGTGAACTAATTCCATGCATAGCAAGAACAGCAGTTGCTGTTGGTGTAGATGGAATTTTTATGGAGGTGCATGATCATCCGTTGAATGCACCAGTGGA TGGTCCAGCACAGTGGCCACTGCGGAACTTGGAGGAACTGCTGGAAGAGCTCATGGCGATAGCTAGGGCGAGTAAAGGGAAGAAGAGTATGAACATTGAT CTCACTCCATTCTTGTGA
AA sequence Show only first row Show all	>Lus10027741 pacid=23156890 polypeptide=Lus10027741 locus=Lus10027741.g ID=Lus10027741.BGIv1.0 annot-version=v1.0 MEAQGTERISRAARSLVPPSLLSWPMKESLLDVVVLVASGVAPWGCAAEISTFAWFVVCCPPSAKGERRGSIAGSGGSWLKLVMTTSEDDGILEKVKVAY DLPIVTDVHESIQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVGSWKTQPRKLRLSGNPNVMVCERGTMFGYNDLIVDPRNLEW MREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDHPLNAPVDGPAQWPLRNLEELLEELMAIARASKGKKSMNID LTPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10027741 [exp]	0	1
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013385 [exp]	1.0	0.8629
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	6.2	0.7864
AT3G44150			unknown protein		Lus10021005 [exp]	7.5	0.7856
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	8.7	0.7819
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	9.7	0.7819
					Lus10033096 [exp]	10.7	0.7819
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	11.5	0.7819
AT3G52490			Double Clp-N motif-containing ...		Lus10042638 [exp]	13.0	0.7807
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	13.1	0.7737
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	13.8	0.7670

Compare expression of checked genes

Lus10027741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.