Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54020 478 / 5e-171 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 465 / 6e-166 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT2G29525 409 / 4e-144 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035551 [exp] 633 / 0 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 549 / 0 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10021111 [exp] 544 / 0 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 394 / 7e-137 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105700 [exp] 514 / 0 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.006G093800 [exp] 513 / 0 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.001G246300 [exp] 372 / 5e-129 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.005G193300 [exp] 44 / 0.0001 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027742 pacid=23156944 polypeptide=Lus10027742 locus=Lus10027742.g ID=Lus10027742.BGIv1.0 annot-version=v1.0 ATGACGCTTTACATTGGCCGAGAAGCTTCTAAGAGAGGAGTAATTGAGCTGCAGTTTCAATTGTTTGTTGGCGATATTCTGAAACGTTCGGTTTTTTCCG TTTTGGGTGTTGAATTCGTGAAGCTATGGAAGAGAGTTTGTGCAGAAACTAGTACCGAGTTGAGCCTTCTTGCCGAGAACTGGCGATACATTCTTGCCGG CTTGATTTGCCAGTACATTCATGGTTTGGCTGCTAGGGGGATTCACTACTTCCATAGACCAGGGCCGGTATTGCAAGATGTCGGATTCTACATACTTCCG GAGCTTGGACAAGATAAAGGCCACATTAGTGAGATGCTCTTCTCATGTGTCTTTCTATCCTTTGTTTTGTGGACATTCCATCCATTCATCTTTAAGGTCA AGAAGATATACACAGTCCTTGTGTGGTGCAGGGTTCTGGCATTTCTAGTTGCTTCTCAATTTCTTCGGATCATCACATTCTATTCTACACAACTTCCCGG TCCAAATTACCATTGCCGCGAGGGCTCGAAACTTGCTAGATTACCTCGTCCTCAGAGTGTACATGAAGTCCTCTTGCTGAACTTTCCTCGCGGTGTTATG TTTGGCTGTGGTGATTTGATCTTCTCATCACACATGATATTTACTTTGGTATTTGTTCGTTCGTACCAGAAGTATGGATCACAAAGATGCATAAAGCAAC TTGCTTGGCTTGTTGCCATTGTTCAGAGCCTCTTAATCATAGCGTCCAGGAAGCACTACACAGTCGATGTCGTGGTTGCATGGTACACAGTTAATTTGGT GGTGTTCTTCGTAGACAAGAAATTGCCTGAACTCCCTAACCGGACCGGTGGAGCTGCAGCAGCATCGTTGCTACCCGTGACTACCAAAGACAAGAACGAA AATACGAAAGAAGAGAACCACAAGCTCTTGAATGGAAACTCAGTCGACGATTGGCGGATAAGAACCCAAGTGAACAGCAAGACCACAGAAGATACGAATG GTATCCCTCCCAATACGAACGCGATGAACGGTGCATAG
AA sequence Show only first row Show all	>Lus10027742 pacid=23156944 polypeptide=Lus10027742 locus=Lus10027742.g ID=Lus10027742.BGIv1.0 annot-version=v1.0 MTLYIGREASKRGVIELQFQLFVGDILKRSVFSVLGVEFVKLWKRVCAETSTELSLLAENWRYILAGLICQYIHGLAARGIHYFHRPGPVLQDVGFYILP ELGQDKGHISEMLFSCVFLSFVLWTFHPFIFKVKKIYTVLVWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKLARLPRPQSVHEVLLLNFPRGVM FGCGDLIFSSHMIFTLVFVRSYQKYGSQRCIKQLAWLVAIVQSLLIIASRKHYTVDVVVAWYTVNLVVFFVDKKLPELPNRTGGAAAASLLPVTTKDKNE NTKEENHKLLNGNSVDDWRIRTQVNSKTTEDTNGIPPNTNAMNGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	0	1
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	1.4	0.8994
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	4.8	0.7961
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	5.1	0.8599
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	6.9	0.8489
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	7.1	0.8192
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	7.3	0.8554
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	8.7	0.8410
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	9.4	0.8184
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008907 [exp]	10.4	0.7739
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	11.2	0.8218

Compare expression of checked genes

Lus10027742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.