Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54030 824 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 789 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G63500 741 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 719 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 711 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 628 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 620 / 0 BSK1 BR-signaling kinase 1 (.1) AT3G09240 612 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 594 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 593 / 0 BSK2 BR-signaling kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035550 [exp] 997 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 785 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10016454 [exp] 746 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 742 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 742 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 731 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 713 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 712 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 688 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093900 [exp] 886 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 877 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 807 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 785 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.002G158400 [exp] 751 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.014G082400 [exp] 750 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 722 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 721 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 624 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 615 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027743 pacid=23156957 polypeptide=Lus10027743 locus=Lus10027743.g ID=Lus10027743.BGIv1.0 annot-version=v1.0 ATGGGTGCTCGCTGTTCTAAATTCCCATTCTGCTGCTTCACCTCTCCCTTCAAGCCATCCGTCCTCGAATCTTCTGATTTTGAGAAAAATGGGGGCAAAA GAGAGGCTGGCTTTAAGGAGTTCACATTGGAGCAGCTGAAATCGGCCACCGGCGGCTTCTCGTCCGACAACATTGTGTCGGAGCACGGCGAGAAGGCTCC CAACGTTGTCTACAGAGGGAAGCTGGATGCTGATCGTTGGATCGCCGTTAAGCGGTTCAACCGGTTGGCCTGGCCAGATTCTCGCCAGTTCCTCGAGGAA GCGAAGGCAGTGGGGAATCTGAGGAGCGAGCGGCTTGTGAATCTGATCGGGTTTTGCTGCCAAGGTGAAGAGAGATTGTTGGTCGCTGAGTTCATGCCCA ATGAAACCCTCGCGAAGCATCTCTTTCACTGGGAGAGCCAGCCGATGAAATGGGCAATGAGGTTGAGAGTGGCTCTATATCTGGCTCAAGCTTTGGAGTA TTGCAGCAGCAAAGGGAGGGCTTTGTACCATGATCTCAATGCCTATAGGGTTCTCTTTGATAAGGATGGGAATCCAAGGCTATCTTGCTTCGGGATGATG AAGAACAGCCGAGATGGCAAGAGTTACAGCACCAATCTCGCCTTCACTCCTCCCGAGTACTTGCGAACCGGTAGAGTGACTCCAGAGAGTGTAGTCTACA GCTTTGGGACACTCTTGTTGGATCTTCTGAGTGGGAAGCACATCCCTCCAAGTCATGCACTTGACTTGATCCGCGGCAAGAACTTCCTGATGCTGATGGA TTCCGCACTCGAAGGCCATTTCTCGAAAGACGACGGCACTGAGTTGGTCAGGCTGGCCACCCGTTGCTTGCAGCTCGAAGCTCGTGAGAGGCCGAACGCA AAGAACCTCGTCACTTCCCTCGTTTCACTCCAGAAAGAAACCGAGGTTCCATCTCATGTCTTGATGGGGATCCCTTCAGCAACTGAGCCGTTATCCTTAA CTCCGTTTGGGGAGGCCTGCTTAAGGATGGATCTCACTGCTGTTCACGAAATGCTCGAGAAAGTAGGATACAAAGACGATGAAGGGATCGCGAATGATTT GTCATTCCAAATGTGGACAAGCCAAATGCAAGAGACCTTAAACTCCAAGAAGCAGGGAGACACCGCCTTTCGAGCTAAGGATTTCCCCACCGCCGTCGAT TGCTACTCACAATTCGTCGATGGGGGAACCATGGTGTCCCCAACCGTGTACGCGAGGCGCTGCCTGTCGTACTTGATGAACGAGATGGCTCAGGAAGCGC TTGGAGACGCAATGCAAGCTCAAGTCGTTTCGCCAGAGTGGTACATTGCGTCCTACTTACAAGCAGCCTGCTTGTTCAGCCTTGGAATGGAGAATGATGC TCAGGAAGCTCTGAAAGACGGCACCAACTTTGAAGCTAGAAGGAACAGAAACTGA
AA sequence Show only first row Show all	>Lus10027743 pacid=23156957 polypeptide=Lus10027743 locus=Lus10027743.g ID=Lus10027743.BGIv1.0 annot-version=v1.0 MGARCSKFPFCCFTSPFKPSVLESSDFEKNGGKREAGFKEFTLEQLKSATGGFSSDNIVSEHGEKAPNVVYRGKLDADRWIAVKRFNRLAWPDSRQFLEE AKAVGNLRSERLVNLIGFCCQGEERLLVAEFMPNETLAKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDKDGNPRLSCFGMM KNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLATRCLQLEARERPNA KNLVTSLVSLQKETEVPSHVLMGIPSATEPLSLTPFGEACLRMDLTAVHEMLEKVGYKDDEGIANDLSFQMWTSQMQETLNSKKQGDTAFRAKDFPTAVD CYSQFVDGGTMVSPTVYARRCLSYLMNEMAQEALGDAMQAQVVSPEWYIASYLQAACLFSLGMENDAQEALKDGTNFEARRNRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	2.8	0.8272
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	3.5	0.8405
AT1G29530			unknown protein		Lus10004585 [exp]	3.7	0.7944
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	4.2	0.8326
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	5.7	0.8119
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	6.3	0.8168
AT1G74160			unknown protein		Lus10034678 [exp]	6.5	0.8288
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	7.9	0.7623
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	8.8	0.8238
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	9.2	0.8253

Compare expression of checked genes

Lus10027743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.