Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 152 / 8e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 138 / 1e-40 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 113 / 1e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 65 / 2e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 65 / 2e-12 RING/U-box superfamily protein (.1) AT5G60580 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 65 / 5e-12 RING/U-box superfamily protein (.1.2) AT3G09760 62 / 7e-11 RING/U-box superfamily protein (.1) AT3G06330 59 / 4e-10 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035549 [exp] 415 / 6e-149 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 217 / 1e-70 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 168 / 1e-52 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 154 / 1e-46 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 152 / 5e-46 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 124 / 2e-35 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 123 / 1e-34 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 100 / 1e-25 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 100 / 9e-25 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105900 [exp] 206 / 1e-66 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 197 / 4e-63 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 165 / 5e-51 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 159 / 1e-48 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 129 / 3e-37 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 122 / 1e-34 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 101 / 7e-25 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 89 / 2e-20 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G452800 [exp] 66 / 7e-13 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1) Potri.011G149200 [exp] 66 / 9e-13 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10027744 pacid=23157073 polypeptide=Lus10027744 locus=Lus10027744.g ID=Lus10027744.BGIv1.0 annot-version=v1.0 ATGTCCGCCATGGAAATCTCTCATCTCCACAACCACCACATCGATTTAGAACAGGGGACTGTTTTCCGCCTCCACCACTACCTCCACGACGACGGCGACC TACGCTGCTTCTCTGATGAAGAGGACGGCGACGCCGCAATTTACTCTTCCCAGTTCTACTCCACCTCTTCCGGCGACGAAGAGTACTACACCTTCGCCGT TCTCCACACGAGGACGGTTTCGTCTGACTCGGCGGTGGTAAAGGTGGGATCTTTGGCAGAGGAGGAGGATGATAAAACGGCGGCGGTGGCGGCGGTGGAG AAAGACTGCAGGATTTGCCAGCTGGGTAATTTGGAGAGCGACGGAATTATGATGGAGTTGGGTTGTTCATGCAAGGACGATCTTGCTGCTGCTCATAAAC TCTGCGCAGAGACCTGGTTCAAGATCAAGGGCAACAGGACGTGCGAGATATGCAACTCGGTTGCCAAGAACGTCGTGGGGGTGGGAGCAATACCAGAGAC AGAAACTCATAATTCGGTAGTGGCTATTGAGCATTCTAACGAGTCGACTAACAACACGTCTATAGATTTACCATCGTTGTTGTCGCCACCGTTGGCTCAG AATTTGGAGACGAATCGGAGCTTTTGGCAAGGCAACCGGTTCCTGAATTTTATGCTGGCTTGTATGGTTTTTGCCTTTGTCATCTCCTGGCTGTTCCATT TCAATGTACCATCTTCTAATGAATAG
AA sequence Show only first row Show all	>Lus10027744 pacid=23157073 polypeptide=Lus10027744 locus=Lus10027744.g ID=Lus10027744.BGIv1.0 annot-version=v1.0 MSAMEISHLHNHHIDLEQGTVFRLHHYLHDDGDLRCFSDEEDGDAAIYSSQFYSTSSGDEEYYTFAVLHTRTVSSDSAVVKVGSLAEEEDDKTAAVAAVE KDCRICQLGNLESDGIMMELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICNSVAKNVVGVGAIPETETHNSVVAIEHSNESTNNTSIDLPSLLSPPLAQ NLETNRSFWQGNRFLNFMLACMVFAFVISWLFHFNVPSSNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10027744 [exp]	0	1
AT3G11590			unknown protein		Lus10021324 [exp]	1.4	0.8636
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	3.5	0.8291
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	4.0	0.8027
					Lus10022013 [exp]	11.5	0.7835
AT3G50780			unknown protein		Lus10022484 [exp]	13.0	0.7894
AT5G44005			unknown protein		Lus10008220 [exp]	13.4	0.7845
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	13.5	0.7799
AT1G68430			unknown protein		Lus10003042 [exp]	14.1	0.8045
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	18.4	0.7780
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	18.8	0.7937

Compare expression of checked genes

Lus10027744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.