Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22285 152 / 5e-43 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22350 150 / 1e-42 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22410 67 / 4e-13 Ubiquitin C-terminal hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035548 [exp] 199 / 4e-65 AT4G22410 102 / 3e-26 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10003795 [exp] 210 / 5e-65 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10010490 [exp] 192 / 5e-58 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Lus10008452 [exp] 42 / 0.0002 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008276 [exp] 42 / 0.0003 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10013599 [exp] 42 / 0.0004 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 42 / 0.0004 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010100 [exp] 188 / 2e-56 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.016G014000 [exp] 183 / 1e-54 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10027745 pacid=23156984 polypeptide=Lus10027745 locus=Lus10027745.g ID=Lus10027745.BGIv1.0 annot-version=v1.0 ATGGCTTGGCTTCTCTTCAGACTTCATTATGAGCTTACAACTTGGAACAAGAATATCAACATCATTTACGATTGCTTTCAGGGGGAAATTGAGGTTATCC AAGAAGTGATCCGGCGTGGTGCTGATCACAGTGCCACTGGTACAGACGGTGAGACTGAACATAACAACGCTCTCAAGGAAACTTTGACAGAGGTGTTCTT GGTGCTCGGTCTGGATTTGCCACCGCCTCTGTTGATGGAGAGTGATGTTATTCCACAGAAGATCGAGGAAGAGACCATCACCGAAGTAGACAAGGATAGT GCCGTGAGGATGAACTGCCGCTTTACCAGATTGCCAAAGTATCTTATTCTTCACATGCAACGATTCAACAACAACATGGTCCCCCTCAAGAAGAACCAAA CTCTAGTCAACTTTCCTGTGAAGAACTTGGAACTGAAGGACTGTATCTCTGTGCCTAGACCAAAGGAGGACGAGAACCCCTGCTCGGAGTACGACTTGAT AGCTAACATCGTCCACGACGGCAAGCGAACAAGGAGGCTCCTACCGAGGTTCTGTGCAGCCCAAGTCGGAAGAGCTACGGTAAATATTAGATTGTACGAG ATGCGGGGTCCAATGGTCTCCGAAACGCTTCCTCAGACGGTTGCTCTCTCTGAGGCATATCTGCAGATATACGAGCAGCATCAGTACTAA
AA sequence Show only first row Show all	>Lus10027745 pacid=23156984 polypeptide=Lus10027745 locus=Lus10027745.g ID=Lus10027745.BGIv1.0 annot-version=v1.0 MAWLLFRLHYELTTWNKNINIIYDCFQGEIEVIQEVIRRGADHSATGTDGETEHNNALKETLTEVFLVLGLDLPPPLLMESDVIPQKIEEETITEVDKDS AVRMNCRFTRLPKYLILHMQRFNNNMVPLKKNQTLVNFPVKNLELKDCISVPRPKEDENPCSEYDLIANIVHDGKRTRRLLPRFCAAQVGRATVNIRLYE MRGPMVSETLPQTVALSEAYLQIYEQHQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	0	1
					Lus10004996 [exp]	2.0	1.0000
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	4.2	1.0000
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	4.9	1.0000
					Lus10003285 [exp]	5.1	1.0000
					Lus10000977 [exp]	6.0	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10002747 [exp]	6.5	1.0000
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	6.5	0.9473
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	6.9	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	7.3	1.0000
					Lus10000363 [exp]	8.1	1.0000

Compare expression of checked genes

Lus10027745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.