Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22285 316 / 8e-105 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22350 315 / 9e-105 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22410 281 / 7e-94 Ubiquitin C-terminal hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003795 [exp] 390 / 9e-134 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10010490 [exp] 385 / 1e-131 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Lus10035547 [exp] 237 / 4e-79 AT4G22285 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014000 [exp] 330 / 2e-110 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.006G010100 [exp] 327 / 5e-109 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10027746 pacid=23157027 polypeptide=Lus10027746 locus=Lus10027746.g ID=Lus10027746.BGIv1.0 annot-version=v1.0 ATGGTGGAGGAAGAAGGTTCGACGAAGAGACAGAGAGTTGAGATAGAAGGTTCATCTGGGAGTCAGGCGATTGATAATCCTCTAGCGGATGGGAATGGAA AGAGCGAGCAGAAGAAGAAGAATGGCGGTGAAGAAAGGGATACGGTAGTAAGGAATGGTGATGAAGGAGGACAGGAGGATGAACTTGATGGATTAGAAGC TCGTTCGGACTGTCCTTATCTGGACACAGTGAATCGCGAGGTGCTGGATTTCGATTTGGAGAAGTTGTGTATGGTGTCGATGTCAAATGTGAATCGCGCG GAGCTGGATTTCACTTCGGAGAAGTTGCGTTGGGTGTCGAGTGTGAATGTGTATGCGTGTCTGGCGTGTGGGAAATATTACCAAGGGAGGGGGAAGAAGT CCCATGCGTATACTCAGAGTGTTGAAACAGGGCGCCATGTGTATATCAACTTAGAGACTGAGAAGGTGTACTGTCTTCCTGAAGGATATGAGATTATCGA TCCTTCTTTGGATGACATACGAGATGCGCTGAATCCGAGGTTTACAAAGGAACAAATTGAACAGTTGGACAAGAAGAAACAATGGTCTTGGGCACTTGAT GGTTCCGATTACATTCCGGGAATGGTTGGCCTCAGTAACATCGAGGGTCGCGTAAGTACCGACTTTGTGTATGTCACAATTCAGTCTCGTATGAGGGTAC CACCGCTAAGAAATTTCTTCCTCATTCCGGAAAACTATGAGAAATCTCCGTCGATTCTCGCTAAACGTTTTGGGGAGCTGACACGAAAGATATGGCATGC TCGAAACTGTAAGGGGCAGGTGAACCCTCATGAGTTCTTTCGAGCAGTTACGAAAGCCAGCAAACAACAGGTTTTGCGTATGGAGGCACTTTGA
AA sequence Show only first row Show all	>Lus10027746 pacid=23157027 polypeptide=Lus10027746 locus=Lus10027746.g ID=Lus10027746.BGIv1.0 annot-version=v1.0 MVEEEGSTKRQRVEIEGSSGSQAIDNPLADGNGKSEQKKKNGGEERDTVVRNGDEGGQEDELDGLEARSDCPYLDTVNREVLDFDLEKLCMVSMSNVNRA ELDFTSEKLRWVSSVNVYACLACGKYYQGRGKKSHAYTQSVETGRHVYINLETEKVYCLPEGYEIIDPSLDDIRDALNPRFTKEQIEQLDKKKQWSWALD GSDYIPGMVGLSNIEGRVSTDFVYVTIQSRMRVPPLRNFFLIPENYEKSPSILAKRFGELTRKIWHARNCKGQVNPHEFFRAVTKASKQQVLRMEAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027746 [exp]	0	1
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	5.9	0.8633
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	10.2	0.8446
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	18.8	0.8274
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	21.8	0.8326
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	22.6	0.7649
					Lus10021578 [exp]	23.0	0.7677
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	26.2	0.8440
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	26.5	0.7830
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	27.1	0.8342
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	29.1	0.8411

Compare expression of checked genes

Lus10027746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.