Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37960 222 / 1e-67 unknown protein AT3G54060 172 / 3e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035544 [exp] 361 / 5e-124 AT2G37960 151 / 6e-42 unknown protein Lus10021116 [exp] 259 / 5e-82 AT2G37960 267 / 5e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094600 [exp] 248 / 2e-77 AT2G37960 322 / 9e-105 unknown protein Potri.016G109100 [exp] 244 / 7e-76 AT2G37960 305 / 2e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027749 pacid=23156937 polypeptide=Lus10027749 locus=Lus10027749.g ID=Lus10027749.BGIv1.0 annot-version=v1.0 ATGATGAACAATTCCGGTGTGGGGAACGGGAAGATGACGCCTACTCAGGTGGCGTTCCTAGTGGACAGATATCTGTGCGACAACAATTTCTCCGGGACTC GGACTGTCTTCAGGAACGAAGCTGCTTCGCTCATCTCGAGAACTCCGGTTAGTGAGGCCCCGAGGAGTTTGTTGAGCTTAGGGGAGATATTGGAGGAGTA TATCATATTGAAAGGGCAGAAGGTAATGTTGGATCAAGAAAGGGTGCTTTTAGAGCACGAGAATTCGAGGGTATGCAACCTCTTAAATGGTATGCAAGAA GTGATGAACGTCTACAATGGTAGCTCCATTCCATGTATTGCGCCGATTATCCAGGCCTCTGCGACAAAGCAGGTCACAGTACTTTCTCGAGCTCCTGCAA ATGTGGTTCCTATTCCCAGGGCTGCCAACAGTAAGCTTTCCGCACCAGTTACGAATCTGTCATTGATGAGAAAGCGTCCGGGTGCAAATTCGAATGGAGT TGTACAGCAGGAACAAGCTCCTCGTGCTTTGAAGAAGTTCAAGTTACTCTCCAAAGCCACACCAAGTCCTGTAATGCATCCACTGGTAAGGAAGCTGCTC ATGGTTCCACTAATGGATCATGCATTGCTAAGAGCTTGCTCAATCAGGCATCAGCTGTCTTCATCTCCTCGAATCGAATGTTCTGGCCCCGAAACACCTC CTCAACAATCAATATCCTCACCGAATGATAAGTCCGAATCTACAATTGGCGTCTCTCCTCCTGTTGCAAATTGCAGCATCAGACCACAAGATGTAACTCC AACGAGCTGCACCGTGATTACCTCGGAGAGGGTCATGGTTAGCCCTTGTAAACGTGTCTCATACACGGTGGAGAGGAACCACTTCGTTTCATCTCCTTCA CCGATGAAAACCGGCTCCAAGATGTCAGTAACAAGAGATTGCGTGAAGGCGAGGCTGGACTTTGGTGGTTCTGATGAGACTGTCTGTGTAGATGATCATA ATCTCGGATTTGATGCCGATGTCTCGGCGCCAGACACTGATAAGGATGATGATATTTTTGGCATGAATTTGCCTGATATATTTGGATCTGACTTCTCCTT TGCTCAGCTGCTAAAGGAACTAGATCTTGGATTGGAAGACCTGCCTGTCCTTGTGAACCAACTTCAACAGCACAATTCGTTGTAG
AA sequence Show only first row Show all	>Lus10027749 pacid=23156937 polypeptide=Lus10027749 locus=Lus10027749.g ID=Lus10027749.BGIv1.0 annot-version=v1.0 MMNNSGVGNGKMTPTQVAFLVDRYLCDNNFSGTRTVFRNEAASLISRTPVSEAPRSLLSLGEILEEYIILKGQKVMLDQERVLLEHENSRVCNLLNGMQE VMNVYNGSSIPCIAPIIQASATKQVTVLSRAPANVVPIPRAANSKLSAPVTNLSLMRKRPGANSNGVVQQEQAPRALKKFKLLSKATPSPVMHPLVRKLL MVPLMDHALLRACSIRHQLSSSPRIECSGPETPPQQSISSPNDKSESTIGVSPPVANCSIRPQDVTPTSCTVITSERVMVSPCKRVSYTVERNHFVSSPS PMKTGSKMSVTRDCVKARLDFGGSDETVCVDDHNLGFDADVSAPDTDKDDDIFGMNLPDIFGSDFSFAQLLKELDLGLEDLPVLVNQLQQHNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37960			unknown protein		Lus10027749 [exp]	0	1
AT3G20430			unknown protein		Lus10024443 [exp]	2.4	0.7425
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	3.9	0.7960
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	4.2	0.7819
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	5.7	0.6758
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	7.7	0.7687
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	9.4	0.7386
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	10.4	0.7669
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	15.0	0.7473
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	15.0	0.6861
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	15.3	0.7275

Compare expression of checked genes

Lus10027749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.