Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09210 283 / 3e-94 PTAC13 plastid transcriptionally active 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035543 [exp] 594 / 0 AT3G09210 292 / 5e-98 plastid transcriptionally active 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094800 [exp] 297 / 1e-99 AT3G09210 357 / 6e-123 plastid transcriptionally active 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027750 pacid=23156930 polypeptide=Lus10027750 locus=Lus10027750.g ID=Lus10027750.BGIv1.0 annot-version=v1.0 ATGATGAACGAAGGACTGGTGCTTCAATGGAGTAGTCGTCGTTACTACTACTGCCACCGGAATACAATTGCTCCGCCTTCGTTGCGTTTTCCGGAAACTA AAAGGATATGTCGACCGTTGATCAGAGCATCGACGACGGAGGGGCAACAGCTGACGGCAAAAGACAGACGGCAGGTGAGGAACCAACGGAGGGAGAGCAA GTCCGGATACAGCTGGAGAGAAGAAGTCGAGGAAAGGCTTAGCATGAAGACTAAGAAGAATGTAATCCGGAAGAAGGACGAGCTCAGCTTGGATCGCTTA GCTGAATTAGGTCCTCAATGGTGGGGGCTGAAGACTGCTATGACTCGTGGCCATCTGACGGCTGATGTTGTCGCCAAATCGTTGGCTCGTAAGTATCCGG AACTCGAATTCAAGATGTATGCTCCGTCGGTGCAAATAAAGAGGAGGCTGAAGAGCGGGAACATATCGACTAAGCTGCAGCCGATATTTCCTGGCACTGT GTTCCTTTGCTGTGTGTTGAACAAAGAGATTCACGATTTCGTTTATGGATGCAGAGGAGTTGGTGGCTTTGTTGGTATCAAAGTTGGATATATGGGGAGA CTATACAATATCCCTAGGCAAGTATCTAAGGAGGACATTCAAAAAGTGGTTAAGCGGGCAGAGGAGGAACAGGAGAAACATGACCAGGCCTTTGAGGAGG AGGAGCAAGCAAGAAGAGTAGAAGATAGCTCGAAAAAGCTTAAGGCCAAAGATACTGTAAAAGAATCGTCAAAGAAGAAGAAGGTTAGCAAGCGGCTGTC TGCTGGTTCGATTGTTCGCGTCCAATCTGGGCCCTTTGCAGAATTCCAAGGCAGCCTTAAGAAAGTTCATCGCAAGACTGGAAAGGCAACTGTTGGCTTT ACACTATTTGGTAAAGAGACCTTAGTAGAATTAGATCTCAATGAGATTGTGACAGAAGCAGCATCAATTTAA
AA sequence Show only first row Show all	>Lus10027750 pacid=23156930 polypeptide=Lus10027750 locus=Lus10027750.g ID=Lus10027750.BGIv1.0 annot-version=v1.0 MMNEGLVLQWSSRRYYYCHRNTIAPPSLRFPETKRICRPLIRASTTEGQQLTAKDRRQVRNQRRESKSGYSWREEVEERLSMKTKKNVIRKKDELSLDRL AELGPQWWGLKTAMTRGHLTADVVAKSLARKYPELEFKMYAPSVQIKRRLKSGNISTKLQPIFPGTVFLCCVLNKEIHDFVYGCRGVGGFVGIKVGYMGR LYNIPRQVSKEDIQKVVKRAEEEQEKHDQAFEEEEQARRVEDSSKKLKAKDTVKESSKKKKVSKRLSAGSIVRVQSGPFAEFQGSLKKVHRKTGKATVGF TLFGKETLVELDLNEIVTEAASI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	0	1
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10027685 [exp]	1.4	0.9145
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	6.5	0.9151
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	8.1	0.9125
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	9.7	0.8592
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	9.9	0.9029
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10032862 [exp]	10.5	0.9027
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10007772 [exp]	12.4	0.8732
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	18.0	0.9105
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	19.1	0.9093
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	19.1	0.9000

Compare expression of checked genes

Lus10027750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.