Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37970 275 / 1e-94 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 75 / 5e-16 SOUL heme-binding family protein (.1) AT5G20140 66 / 8e-13 SOUL heme-binding family protein (.1.2) AT1G17100 50 / 2e-07 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000106 [exp] 298 / 1e-104 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10017193 [exp] 298 / 3e-104 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10000227 [exp] 241 / 1e-81 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10035541 [exp] 178 / 8e-58 AT2G37970 131 / 2e-39 SOUL heme-binding family protein (.1) Lus10022712 [exp] 84 / 4e-19 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 70 / 2e-14 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10013345 [exp] 59 / 5e-10 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 53 / 4e-08 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 50 / 2e-07 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109400 [exp] 284 / 2e-98 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 77 / 1e-16 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.015G080000 [exp] 58 / 3e-10 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10027752 pacid=23157064 polypeptide=Lus10027752 locus=Lus10027752.g ID=Lus10027752.BGIv1.0 annot-version=v1.0 ATGGGTATGGTGCTAGGAAAGATCCCAGTGGAAACTCCGAAGTACGAACTGATCAAAGCCTGCAAAGACTACATGATCCGGAAATACGTTCCAGCAGTTG CGGCACAGATAACCTACAACCCGTCTGAGTTCAAGGGAGACAAAGACGGTGGGTTTACTGTGCTTGCCAAGTACATAGGCGTGTTTGGGACCCCGCAGAA TGGCAAGCCGGAAGAGAAGATTGCAATGACTGCTCCTGTTATCTCGAAAACCGGGGAAAAGATTGCGATGACTGCTCCTGTGGTGACTAAAGAAGGTGGC GGTGGTGGAGAGATGGTTACGATGCAGTTCTTGTTGCCGGCGAAGTACCAGAAGGCGGAGGATGCTCCAAAGGCGGTGGATAAGAGGGTTGTGATAAGGG AAGTGGGTGAGAGGAAGTATGGAGTGGTGAAGTTTTCGGGTGTGGCGAGCGATGGTGTTGTGGCGATAAAGGTGGAGAAGCTGAAGGAGAGGTTGGTGGA AGATGGGTATAAGATAGTTGGGGAGTATTTGTTGGCTAGGTATAATCCACCTTGGTTGACTCTGCCTCCTTTCAGAACTAATGAGGTTATGGTTCCTGTC GAATGA
AA sequence Show only first row Show all	>Lus10027752 pacid=23157064 polypeptide=Lus10027752 locus=Lus10027752.g ID=Lus10027752.BGIv1.0 annot-version=v1.0 MGMVLGKIPVETPKYELIKACKDYMIRKYVPAVAAQITYNPSEFKGDKDGGFTVLAKYIGVFGTPQNGKPEEKIAMTAPVISKTGEKIAMTAPVVTKEGG GGGEMVTMQFLLPAKYQKAEDAPKAVDKRVVIREVGERKYGVVKFSGVASDGVVAIKVEKLKERLVEDGYKIVGEYLLARYNPPWLTLPPFRTNEVMVPV E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	0	1
					Lus10043316 [exp]	5.7	0.9831
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	9.8	0.9799
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	13.5	0.9789
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	15.7	0.9768
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	17.4	0.9774
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	17.7	0.9527
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10037336 [exp]	17.8	0.9425
					Lus10014508 [exp]	18.0	0.9773
AT5G25240			unknown protein		Lus10006290 [exp]	20.2	0.9530
					Lus10032178 [exp]	21.1	0.9772

Compare expression of checked genes

Lus10027752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.