Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 730 / 0 O-fucosyltransferase family protein (.1) AT3G54100 714 / 0 O-fucosyltransferase family protein (.1) AT5G01100 640 / 0 O-fucosyltransferase family protein (.1) AT5G35570 572 / 0 O-fucosyltransferase family protein (.1) AT1G14020 404 / 8e-135 O-fucosyltransferase family protein (.1) AT5G15740 403 / 2e-134 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 399 / 4e-132 O-fucosyltransferase family protein (.1) AT3G02250 394 / 1e-130 O-fucosyltransferase family protein (.1) AT2G03280 386 / 4e-128 O-fucosyltransferase family protein (.1.2) AT5G64600 387 / 8e-128 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035540 [exp] 1118 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 940 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 927 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 590 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 586 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 563 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 557 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 417 / 1e-139 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 402 / 5e-134 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 746 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 732 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 589 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 416 / 3e-139 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 410 / 4e-137 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 407 / 4e-136 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 407 / 6e-136 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 404 / 7e-135 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 400 / 9e-133 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 399 / 1e-132 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027753 pacid=23156929 polypeptide=Lus10027753 locus=Lus10027753.g ID=Lus10027753.BGIv1.0 annot-version=v1.0 ATGGCAATGTCGTCGTCGTCCGGCGGGAACGCAGCAGCAACCAATGTCAGCCCCCACAACAACCACCCGGGCCCCACAGCCACCCGCCGCAGAGTTGACG CCGCCTCCGATTCCCACTCCGAAGTCGACGAATCCGCCGCCGGAGGATGCAACGCCGCCTCCGCCGGTGGAGCCTGCGCCGCCGTCGCGAGCAACAGCAT CAACAGCATCGGAAACGTTGGTTGTCACCATCACAACTGCCAACGGCATCCGGTGATCAAGTACCTCCTCCTTCGGCGGAAGCTATTCTTCTTCCTCCCT GAGGTTCTCCTCATCGGAGTTGAGGAAGGCTGCCAGGGCGCGGCGGCGATGAGATTTGGGAAGTGCCTTGGGCGGAGGATTATCGGCGCGTTGATCCTCC TGGAGAACAACATCAGTGGCGGAGACGGCGGCGGAGGTGGTGGCGGAGGAAAGGAGATGAACGGGCTGTTGATTCTTCAGACTTTCAAAGACGATTGGGC TATGGCTCAGCGCGTCCTCTCCGAAACTCAGTCCACCATCCCCAAACGCCTCATCGAGAAGTTTCCGACGCCAGAAATTTGGATGAAGCCAAACAATGAG AACTTCTATAAGTGCATAACACGGCCGAGAAACCCATTATTAAGGTCAAGGAAAACAAACGGATATCTACTTGTTCACGCAAATGGTGGGCTGAATCAGA TGAGAACAGGGATCTGTGACATGGTTGCTGTTGCTAAACTGATGAATGCAACTCTGGTTCTTCCTTCTCTCGATCACGAATCGTTCTGGACCGATCCCAG TACGTTTAAGGACATATTCGACTGGAAGCACTTCATGAAAGTGCTGAGAGATGATGTGGACATAGTTGAGTATTTGCCACCCCATTTTGCAAAGAAGAAG CCTCTTGTTAAGGCTCCAATCTCTTGGTCCAAGGCTAGCTACTACAGAGGAGAGGCAGTGCTGTTGAAGAAGCACAAAGTCATGAAGTACACTCACACAG ACTCCAGACTAGCCAACAATGGCCTTTCAGCTTCGATCCAGAAGCTCCGGTGTCGAGCCAATTATGAAGCTCTCCGGTACTCCCAAGATATCGAGGATCT CGGCAAGACATTGGTCGCTCGGCTCAGGAAGACCAACGAGCCTTACGTTGGCCTGCACCTAAGATATGAGAAAGATATGCTGTCTTTCACCGGCTGCAAC CACAACCTGACTGCAGAGGAAGCTGAGGAGCTGAGGATAATGAGGTACAGTGTTCCTCACTGGAAGGAGAAGCAGATAGACAGCGAAGCTCGAAGACAGG AAGGAGGATGCCCCATGTCTCCAAGAGAAGCCGCCATGTTCCTCAAGGCTATGGGGTATCCTCGATCTACGACTGTCTACATAGTTGCTGGACCGATCTA CGGGAGCAATAGCATGGCCGAATTTCGAGAGGAATATCCGAATGTGTTTACTCATTCCACTTTGGCAACTGAAGAAGAGCTGGAACCTTTCAAGCCTTAT CAGAACCGTTTAGCAGCTCTGGATTACATTGTTGCTCTTGAGAGTGATGTGTTTGTTTACACTTACGATGGGAATATGGCGAAGGCAGTTCAGGGTCATC GGAGGTTTGAAGGTTTTCGAAAGACTATCAATCCAAATAGGCAGAATTTTGTGGCGCTGATTGATCAGTTGAATGAGGGATCGCTTTCGTTTGATGATTT CGCTTCAAAGGTCAGAACTTTGCATGAACACAGGCTTGGACAGCCTTATAACAGACGGCTAGGTGAATCGCCGAGGCTGGAAGAGAACTTCTACGCGAAC CCTCTTCCGGGATGTTTGTGTAACCGAACTCAGGAGCGAATGAGCACCTTGGCAGCGATCGAGAGGAGGCAAAAGAATGTTGGGACCGCATCTGGGAGGT GA
AA sequence Show only first row Show all	>Lus10027753 pacid=23156929 polypeptide=Lus10027753 locus=Lus10027753.g ID=Lus10027753.BGIv1.0 annot-version=v1.0 MAMSSSSGGNAAATNVSPHNNHPGPTATRRRVDAASDSHSEVDESAAGGCNAASAGGACAAVASNSINSIGNVGCHHHNCQRHPVIKYLLLRRKLFFFLP EVLLIGVEEGCQGAAAMRFGKCLGRRIIGALILLENNISGGDGGGGGGGGKEMNGLLILQTFKDDWAMAQRVLSETQSTIPKRLIEKFPTPEIWMKPNNE NFYKCITRPRNPLLRSRKTNGYLLVHANGGLNQMRTGICDMVAVAKLMNATLVLPSLDHESFWTDPSTFKDIFDWKHFMKVLRDDVDIVEYLPPHFAKKK PLVKAPISWSKASYYRGEAVLLKKHKVMKYTHTDSRLANNGLSASIQKLRCRANYEALRYSQDIEDLGKTLVARLRKTNEPYVGLHLRYEKDMLSFTGCN HNLTAEEAEELRIMRYSVPHWKEKQIDSEARRQEGGCPMSPREAAMFLKAMGYPRSTTVYIVAGPIYGSNSMAEFREEYPNVFTHSTLATEEELEPFKPY QNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPNRQNFVALIDQLNEGSLSFDDFASKVRTLHEHRLGQPYNRRLGESPRLEENFYAN PLPGCLCNRTQERMSTLAAIERRQKNVGTASGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	1.0	0.9955
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	1.4	0.9878
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	3.5	0.9733
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	4.0	0.9688
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	4.2	0.9495
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	4.7	0.9475
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	4.9	0.9587
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	5.1	0.9371
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	5.5	0.9619
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	6.3	0.9490

Compare expression of checked genes

Lus10027753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.