Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74270 196 / 4e-66 Ribosomal protein L35Ae family protein (.1) AT1G07070 195 / 2e-65 Ribosomal protein L35Ae family protein (.1) AT1G41880 192 / 3e-64 Ribosomal protein L35Ae family protein (.1) AT3G55750 191 / 6e-64 Ribosomal protein L35Ae family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035539 [exp] 205 / 2e-69 AT1G74270 215 / 4e-74 Ribosomal protein L35Ae family protein (.1) Lus10021121 [exp] 198 / 1e-65 AT1G07070 197 / 6e-66 Ribosomal protein L35Ae family protein (.1) Lus10028254 [exp] 192 / 3e-64 AT1G41880 207 / 3e-71 Ribosomal protein L35Ae family protein (.1) Lus10040235 [exp] 191 / 9e-64 AT1G41880 207 / 7e-71 Ribosomal protein L35Ae family protein (.1) Lus10017188 [exp] 166 / 3e-48 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194200 [exp] 194 / 3e-65 AT1G07070 219 / 8e-76 Ribosomal protein L35Ae family protein (.1) Potri.008G063200 [exp] 193 / 7e-65 AT1G07070 216 / 2e-74 Ribosomal protein L35Ae family protein (.1) Potri.008G059400 [exp] 193 / 8e-65 AT1G74270 216 / 1e-74 Ribosomal protein L35Ae family protein (.1) Potri.010G199400 [exp] 192 / 3e-64 AT1G07070 214 / 1e-73 Ribosomal protein L35Ae family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF01247 [flax] [poplar] Ribosomal_L35Ae Ribosomal protein L35Ae
Representative CDS sequence Show only first row Show all	>Lus10027754 pacid=23157091 polypeptide=Lus10027754 locus=Lus10027754.g ID=Lus10027754.BGIv1.0 annot-version=v1.0 ATGGTGAAGGAACGACAGGGAGAGCGCGTCAGGCTCTATGTTCGAGGAACGGTTCTCGGATACAAGAGGTCGAAGTCGAACCAGTACCCGAACACTTCGC TGATTCAGATCGAGGGAGTGAACACCAAGGAAGAGGTGGATTGGTACAGGGGCAAGCGCATGGCGTATATCTACAAGGCTAAGGTGAAGAAGAATGGAAG CCACTACCGCTGCATTTGGGGTAAGGTTACTAGGCCTCACGGTAACAGTGGTGTTGTTCGAGCCAAGTTCACGTCTAACCTTCCTCCCAAGTCAATGGTT AATTGTGTGGTTACTGAATCTTACAGGGCGATAGAGTCAGGGTCTTCATGTATCCAAGCAACGTTTGAGGTGCCCATGGCAGAGTTGACCCTCTACCACT CGAGCCTTAAGTTTCATCCTGTAGCCTTTGGCATTGCGTTTCTGAGAGCTTAG
AA sequence Show only first row Show all	>Lus10027754 pacid=23157091 polypeptide=Lus10027754 locus=Lus10027754.g ID=Lus10027754.BGIv1.0 annot-version=v1.0 MVKERQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVDWYRGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMV NCVVTESYRAIESGSSCIQATFEVPMAELTLYHSSLKFHPVAFGIAFLRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74270			Ribosomal protein L35Ae family...		Lus10027754 [exp]	0	1
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	2.0	0.9679
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	3.2	0.9458
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	5.1	0.9500
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	5.5	0.9456
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	6.5	0.9446
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	6.6	0.9459
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	7.1	0.9467
AT4G14320			Zinc-binding ribosomal protein...		Lus10000176 [exp]	10.4	0.9415
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	10.6	0.9383
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	11.0	0.9429

Compare expression of checked genes

Lus10027754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.