Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54110 491 / 6e-177 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 429 / 1e-152 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 193 / 1e-59 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 188 / 8e-58 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT1G14140 179 / 4e-54 Mitochondrial substrate carrier family protein (.1) AT5G09470 170 / 2e-50 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 155 / 3e-45 Mitochondrial substrate carrier family protein (.1) AT5G19760 136 / 6e-38 Mitochondrial substrate carrier family protein (.1) AT3G21390 96 / 2e-22 Mitochondrial substrate carrier family protein (.1) AT5G61810 95 / 5e-22 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035538 [exp] 588 / 0 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 525 / 0 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 506 / 0 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 430 / 7e-153 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 416 / 9e-147 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10030443 [exp] 179 / 2e-54 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 143 / 3e-40 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 144 / 1e-39 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 138 / 1e-38 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 530 / 0 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 509 / 0 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 447 / 2e-159 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.017G045100 [exp] 206 / 1e-64 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 206 / 1e-64 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 206 / 2e-64 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 194 / 5e-60 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 187 / 2e-57 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 187 / 4e-57 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 179 / 5e-54 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10027755 pacid=23156988 polypeptide=Lus10027755 locus=Lus10027755.g ID=Lus10027755.BGIv1.0 annot-version=v1.0 ATGGTTGGCCAAGGCGGCGGTAAATCGGACATCTCCTTCCCCGGCACTTTAGCCAGTGGCGCCTTCGCCGCTTGCTTCGCCGAGATTTGTACGATCCCGC TGGACACAGCGAAAGTGAGACTTCAGCTTCAGAAATCAGCCGTCGCTGGAGATGTGTTGACCATGCCTAGATATAACGGTATGTTGGGCACTGTGGCCAC CATTGCTAGGGAAGAAGGAGCTGCTTCGCTCTGGAAAGGCATAATTCCTGGACTCCATCGGCAGTGTCTGTATGGTGGCTTAAGGATAGGTTTATACGAC CCTGTTAAGAACTTCTACGTTGGCCCTGACTTTGTTGGAGATGTTCCTTTGTCTAAGAAAATCCTAGCTGCTCTAACCACTGGCGCTGTAGGGATCTCGA TTGCCAATCCAACCGATCTTGTGAAAGTACGATTGCAGTCTGAGGGGAAGTTACCTCCTGGCGTGCCAAGACGCTATTCTGGAGCTCTAAATGCTTATTC TACTATAGCGAGACAGGAAGGAATAGGTGCGCTTTGGACTGGGGTTAGCCCGAATATTGCACGTAATGCTATTATAAATGCTGCGGAACTAGCCAGTTAT GATCAAGTGAAGGAGACATTACTGAGAATTCCAGGATTTAAAGACAATGTTGTAACTCATCTCCTAGCCGGTCTCGGGGCAGGCTTTTTCGCTGTCTGCA TTGGTTCTCCAGTTGATGTGGTTAAGTCCAGAATGATGGGGGACTCAGCATACAAGAGTACAATTGACTGTTTCGTCAAGACTTTGAAGAATGACGGACC TCTTGCTTTCTACAAAGGGTTTATCCCGAATTTCGGCCGCCTGGGATCTTGGAACGTGATCATGTTCTTAACCTTGGAACAGGCTAAGAAGTTCGTAAAA AGTCTGGAATCGCCGTCATCTTGA
AA sequence Show only first row Show all	>Lus10027755 pacid=23156988 polypeptide=Lus10027755 locus=Lus10027755.g ID=Lus10027755.BGIv1.0 annot-version=v1.0 MVGQGGGKSDISFPGTLASGAFAACFAEICTIPLDTAKVRLQLQKSAVAGDVLTMPRYNGMLGTVATIAREEGAASLWKGIIPGLHRQCLYGGLRIGLYD PVKNFYVGPDFVGDVPLSKKILAALTTGAVGISIANPTDLVKVRLQSEGKLPPGVPRRYSGALNAYSTIARQEGIGALWTGVSPNIARNAIINAAELASY DQVKETLLRIPGFKDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSAYKSTIDCFVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVK SLESPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	0	1
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	1.0	0.9503
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	5.7	0.9468
AT4G21920			unknown protein		Lus10001143 [exp]	7.2	0.9425
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	8.4	0.9369
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	8.4	0.9490
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	10.6	0.9363
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	11.0	0.9383
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	13.7	0.9347
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	13.9	0.9371
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	14.4	0.8930

Compare expression of checked genes

Lus10027755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.