Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54120 178 / 2e-56 Reticulon family protein (.1) AT3G10915 131 / 5e-38 Reticulon family protein (.1.2.3.4.5.6) AT5G41600 125 / 2e-35 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G11220 125 / 2e-35 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT4G23630 122 / 6e-34 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 121 / 1e-33 RTNLB3 Reticulan like protein B3 (.1.2) AT2G46170 118 / 1e-32 Reticulon family protein (.1.2) AT3G61560 117 / 2e-32 Reticulon family protein (.1.2) AT3G19460 116 / 2e-32 Reticulon family protein (.1.2) AT3G18260 113 / 6e-31 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035537 [exp] 350 / 2e-124 AT3G54120 185 / 2e-59 Reticulon family protein (.1) Lus10019812 [exp] 146 / 5e-44 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10014102 [exp] 141 / 4e-42 AT3G19460 209 / 5e-69 Reticulon family protein (.1.2) Lus10036405 [exp] 134 / 1e-38 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10041080 [exp] 132 / 9e-38 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10027548 [exp] 127 / 8e-36 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10014948 [exp] 124 / 5e-35 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 124 / 7e-35 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10032451 [exp] 121 / 5e-34 AT3G18260 268 / 9e-92 Reticulon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110200 [exp] 261 / 5e-89 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.012G035600 [exp] 135 / 4e-39 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.019G057400 [exp] 131 / 7e-38 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.001G300400 [exp] 130 / 9e-38 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.015G027300 [exp] 126 / 1e-35 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 125 / 3e-35 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.005G206800 [exp] 125 / 3e-35 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.014G091200 [exp] 123 / 1e-34 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 119 / 4e-33 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.003G133600 [exp] 119 / 5e-33 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10027756 pacid=23157022 polypeptide=Lus10027756 locus=Lus10027756.g ID=Lus10027756.BGIv1.0 annot-version=v1.0 ATGGGTTCATCATTTCCAGATCCATCGTTTGATCGACAAAGAGGTGTTCATCAAATCTTTGGAGGAGGTTTAGTTGCAGATGTTGTACTATGGAGGGAAA GCAACATCACAGTTGGGATATTACTAGTTACAGTAGCTTCATGGGTGGTTTTTGAGATCTCTGGGTACACACTTATCTCACTTGTTTCTAGTGTTCTTCT CCTGCTTCTCATCATTCTATTCATGTGGGCCAAATCAGCTGCAATTCTCAACAGACCTCCTCCACCTCTACCAAAACTGCAGCTTTCAGAAGAGGTGATG AATCAAGCTGCAACCTTTATCAGAACCCATGTAAATAAATTCCTAGCAGTTTCTCAGAACGTTGCACTAGGGAAAGACACAAGGCTGTTCCTCAAAGTGG CTGCATTTCTCTTGCTGATTTCGATTTTTGGTGGCTTGGTTGATCTTCGTACCTTGGGATACACCAGCCTGCTGTCAGTTTTGACTGTCCCGGCACTCTA CGAAAAATACGGAGACGAAATCGATAGATACGTTAGGATGGTTCGCTACGAGATGCAGAAACTGCGTTGCAAAATCGATGTCGAGGTCGTTGGTAGAGTG AAGAAATGGGTATTGGAGAAGCAGAAACTGAGATGA
AA sequence Show only first row Show all	>Lus10027756 pacid=23157022 polypeptide=Lus10027756 locus=Lus10027756.g ID=Lus10027756.BGIv1.0 annot-version=v1.0 MGSSFPDPSFDRQRGVHQIFGGGLVADVVLWRESNITVGILLVTVASWVVFEISGYTLISLVSSVLLLLLIILFMWAKSAAILNRPPPPLPKLQLSEEVM NQAATFIRTHVNKFLAVSQNVALGKDTRLFLKVAAFLLLISIFGGLVDLRTLGYTSLLSVLTVPALYEKYGDEIDRYVRMVRYEMQKLRCKIDVEVVGRV KKWVLEKQKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	0	1
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	1.0	0.8905
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	2.0	0.7751
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	7.3	0.6671
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	8.8	0.7297
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	10.0	0.7164
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	16.2	0.6896
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	17.3	0.7094
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	19.9	0.7229
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	21.6	0.6780
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	22.4	0.7029

Compare expression of checked genes

Lus10027756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.