Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54130 334 / 2e-115 Josephin family protein (.1) AT2G29640 56 / 8e-09 JOSL JOSEPHIN-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035536 [exp] 592 / 0 AT3G54130 323 / 4e-111 Josephin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110300 [exp] 409 / 4e-145 AT3G54130 347 / 8e-121 Josephin family protein (.1) Potri.006G095700 [exp] 352 / 4e-123 AT3G54130 321 / 1e-111 Josephin family protein (.1) Potri.001G249400 [exp] 40 / 0.0006 AT2G29640 230 / 2e-75 JOSEPHIN-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02099 [flax] [poplar] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Lus10027757 pacid=23156870 polypeptide=Lus10027757 locus=Lus10027757.g ID=Lus10027757.BGIv1.0 annot-version=v1.0 ATGGACGGAGCCAGCAATGGAGGGATGCTGTACCACGAGGTGCAGGAGTCCAAGCTCTGCGCCGTTCATTGCGTCAACACCGTCCTCCAGGGCCCTTTCT TCTCGGAATTCGATTTGGCCGCCCTTGCCTCTGATCTTGACACCAGGGAACGCCAGGTCATGTCCCAGCGCGCTCCTCCTTCTCCTGCCGCTTCCGGCGG AGGCGATTTCCTCTCCGTTGAGTCTCACAATGTCTCCATGGACGGCGATTTCAGCATCCAGGTTTTGCAGAAGGCCTTAGAAGTATGGGACTTGCAAGTG ATTCCATTCAGCAGTCCACTGGCCGAGCCAGCACAGGTGGACCCAGATACCGAAAACGCATTCATATGTCACCTTCACGACCACTGGTTCTGCATCAGAA AAGTGAACGGGGAATGGTACAACTTCGACAGTCTCTCTGCTGCACCGACTCACCTCTCAAAGTTCTACCTCGCAGCTTACCTGGACTCCCTGAGAAGCGC TAGCTGGAGCATATTCATAGTGAGGGGCAACTTCCCAGCCGAGTTCCCCATCTCGTCGTCCGAATCTTCAAACGGCTATGGCCAGTGGCTGTCCCCTGAG GACGCTGATAGGATCATTAAGTCCTGCTCCGGCGGCAGGGAACCGAAGCCCATCACCTTCATCCCACCGGTTAACGATCCGTATCAAGATATGTTGTCGG ATGGGGATGACGAGGATTTGAAAGCCGCGATTGCTGCTAGCTTGATGGATTCGTCCCAAGCTTCTGCCAGTAACAAGGAACCGGAGAGCAAAGAGACACT AGCAGTTAGCTCTGAGAAGGACAAGGAACAAAAGAACAAAGAGGCAGCAGCTGACTCCTCGAAGGACGAGGAATCGAAGAACACGAACGAACAGCCGATT AAAGATGAATGA
AA sequence Show only first row Show all	>Lus10027757 pacid=23156870 polypeptide=Lus10027757 locus=Lus10027757.g ID=Lus10027757.BGIv1.0 annot-version=v1.0 MDGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDTRERQVMSQRAPPSPAASGGGDFLSVESHNVSMDGDFSIQVLQKALEVWDLQV IPFSSPLAEPAQVDPDTENAFICHLHDHWFCIRKVNGEWYNFDSLSAAPTHLSKFYLAAYLDSLRSASWSIFIVRGNFPAEFPISSSESSNGYGQWLSPE DADRIIKSCSGGREPKPITFIPPVNDPYQDMLSDGDDEDLKAAIAASLMDSSQASASNKEPESKETLAVSSEKDKEQKNKEAAADSSKDEESKNTNEQPI KDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54130			Josephin family protein (.1)		Lus10027757 [exp]	0	1
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10003504 [exp]	8.9	0.6589
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	11.9	0.6856
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	50.2	0.6484
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039162 [exp]	51.5	0.6432
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	60.0	0.6268
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	69.4	0.6342
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10022564 [exp]	78.7	0.5921
					Lus10001828 [exp]	84.2	0.6081
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10006991 [exp]	187.9	0.5237
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	198.3	0.5555

Compare expression of checked genes

Lus10027757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.