Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38025 218 / 1e-71 Cysteine proteinases superfamily protein (.1) AT3G57810 65 / 2e-12 Cysteine proteinases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035535 [exp] 220 / 6e-73 AT2G38025 112 / 5e-31 Cysteine proteinases superfamily protein (.1) Lus10021738 [exp] 105 / 8e-29 AT2G38025 58 / 3e-11 Cysteine proteinases superfamily protein (.1) Lus10020438 [exp] 63 / 2e-11 AT3G57810 290 / 3e-97 Cysteine proteinases superfamily protein (.1.2.3) Lus10015803 [exp] 54 / 5e-09 AT3G57810 215 / 3e-71 Cysteine proteinases superfamily protein (.1.2.3) Lus10037002 [exp] 54 / 9e-09 AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) Lus10028840 [exp] 44 / 6e-05 AT3G57810 194 / 4e-59 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110400 [exp] 266 / 2e-90 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.016G050900 [exp] 65 / 4e-12 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 59 / 4e-10 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G177400 [exp] 57 / 7e-10 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10027758 pacid=23157097 polypeptide=Lus10027758 locus=Lus10027758.g ID=Lus10027758.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAATTCGTCACTGATTTCAGGGTAACGATTATGCTTGCAGGGAATAATATCCTTCAGCAGCTGAAACATGGAGCTGCACACTTCGAGCTCG TCTCTTCGCCTCTTCCTTCCATTTCAGCTTCGCCGCCGCAAACCCGCTCGTTACCCTTCTTCTCCGCCGGCAACAGTCACCGGTTCTTCGCTCGAATCGG TCCTCCACCAGGTAAAGGAGTGCCGTCTACGAAGAAGTTGGAGCAATATTCAATCCAGAAAGTCACCGGTGATGGCCGCTGTCTGTTCCGTGCCTTGGTT AAAGGAATGGCTCTCAACAAAGGTATCCCCCTTAAGCCAAGGGAAGAGAGAGATGATGCAGATGACTTACGAATGGCAGTTAAGGAGCTAATATGTGGCA GCAGTAATGAGCGCGAACAGTATGAAGAAGCAATAATTGCAATCACAGTTGATGAACCATTGAAGCGATCCTCTGCCAACTTGTACCCTCGAATTCTGAA TCATTCTATTTTTACCGACAACCTTTTTCACGCGGGGCAGGTACTCTCGAAATTGTGCCGACAACCAATCATTGTGTACATTCCAGAGCATGAGCATGCC GGAGGTGGGCGTGGGTCTGGCTTTCTTCCAATAGCAGAATATGGAAGTGAGTTCAGCAAATGGAAGAGGAAGAAAGCTGTGAGGCTTCTTTACAGTGGTC GGAACCATTATGATCTGCTTGTTTAG
AA sequence Show only first row Show all	>Lus10027758 pacid=23157097 polypeptide=Lus10027758 locus=Lus10027758.g ID=Lus10027758.BGIv1.0 annot-version=v1.0 MEEEFVTDFRVTIMLAGNNILQQLKHGAAHFELVSSPLPSISASPPQTRSLPFFSAGNSHRFFARIGPPPGKGVPSTKKLEQYSIQKVTGDGRCLFRALV KGMALNKGIPLKPREERDDADDLRMAVKELICGSSNEREQYEEAIIAITVDEPLKRSSANLYPRILNHSIFTDNLFHAGQVLSKLCRQPIIVYIPEHEHA GGGRGSGFLPIAEYGSEFSKWKRKKAVRLLYSGRNHYDLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	0	1
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	2.4	0.9261
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	2.6	0.9414
AT4G30845			unknown protein		Lus10026098 [exp]	3.5	0.9224
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10025158 [exp]	3.5	0.8979
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	4.0	0.9192
AT1G17850			Rhodanese/Cell cycle control p...		Lus10041981 [exp]	4.6	0.8863
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	7.4	0.9091
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	9.2	0.9072
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10029142 [exp]	12.0	0.8876
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	12.6	0.8578

Compare expression of checked genes

Lus10027758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.