Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09100 766 / 0 mRNA capping enzyme family protein (.1.2) AT5G01290 714 / 0 mRNA capping enzyme family protein (.1) AT5G28210 553 / 0 mRNA capping enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035534 [exp] 911 / 0 AT3G09100 770 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10040496 [exp] 402 / 6e-135 AT5G28210 261 / 1e-82 mRNA capping enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110700 [exp] 867 / 0 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G096000 [exp] 858 / 0 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03919 [flax] [poplar] mRNA_cap_C mRNA capping enzyme, C-terminal domain CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain CL0078 [flax] [poplar] DNA_ligase PF01331 [flax] [poplar] mRNA_cap_enzyme mRNA capping enzyme, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10027759 pacid=23156955 polypeptide=Lus10027759 locus=Lus10027759.g ID=Lus10027759.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCGATGGATTTGAACGCCTCGCCTCTGCCTGAAGACGAGGAGGATAATTTTGAAAGACACGTAGAAGAATATAGTGCCAATCATGAGGAAC GCGGAGAGACTTCTGTACAGCTTGCACGACGGGAGCGGGACGAGAGGCGCAAGCGTTTGAAAATTGATAATTCAGATGACAGACCCTCTTCTGTACCTCG GCAGGCAGTTCATGATCAAAATTATCAATCTAAATACCAGAAGTCATATGATAAAAGCAGACTACCTCCTGGATGGTTGGATTGCCCCCCTGCTGGTAAT GAGATCTGTGGAATTGTTCCTTCTAAGGTTCCACTTGGTGAAATGTTCTACGAGGATGTTCCACCTGGTAAAAGATATTCTTTCAAGCAAGTGGTTCATA ATCAAAGAGTTTCAGGAAGAAAAATTCAATGCCGGGGACGGGATGCTGTACCAGAGAACGTGGCTGTAAATCAATTTGTTTATGAAGTCATGCAGTTTCT CTCGCTTCAGAAACTTTCTAAGAAGTATATTCTTGTTCATTGCACTCATGGGCACAACCGCACAGGATACATGATCGTTCATTTTTTGATGCGTACACAG TTGATGTCTGTCACAGAGGCAATTACTAAATTTGCTGAAGTACGTCCACCTGGGATCTACAAACCAGACTATATTGATGCTCTGTACACTTTCTACCATG AAAAGAGGCAGGACATTTGCCCTCCGATTCCAGAGTGGAAGAGATCTTCTGAATTTGATCTTAATGGAAAAGCAGTACCTGATGACGAAGATGATGGCGC TTTAGCCGTGCCTTTGAATAACAATCAAGAGATGGATGTCAAGCTGACAAATGATGATGTTTTGGGGGATGACATACCAGTTGACCAGCTCAACACATTG AGGCAGATCTGTTATCAAATGCTAAAAATGCATATGGGAGGCAAAACGTTCCCCGGTTCACACCCAGTATCTTTGAGCAGGGATAATTTACAGAAATTGA GGCAACGTTATTATTATGCTACCTGGAAAGCTGATGGTACGCGATATATGATGCTAATCACAATGGATGGGTGTTATCTGATCGATAGGAGTTTCAACTT TCGAAGGGTCCAGATGAAGTTTCCTTGCCGGATTGGTAGTGATGTTTCGTTCGATAGGACGCATCATTTTACCTTGCTTGATGGGGAGATGATTATTGAC ATTGTGCCAGAAACCCAGAAGCAAGCGAGACGCTACCTCATCTATGATGTGATGGCAATCAACAATGTGTCTGTCGTAGAGCGGCCTTTCAGTGAGCGTT CAAAAATGATTGAGAAGGAAGTCATTGAACCTCGAAACTATGAACGTGCACATATCACTCAGAGCAAGAATCCCTGCTATGATTATTCTTTGGAACCCTT CAGCGTTAGAAAGAAGGGTTTCTGGCCACTTTCTGCCGTTAAGAAGCTTTTGAAGGACTTCATCCCTACGCTTTCACATGAGGCAGATGGACTTATTTTT CAGGGATGGGACGATCCTTACGTTCCAAGGACTCACGATGGTCTGTTGAAGTGGAAGTACCCGGAGATGAACTCCGTTGACTTCTTGTTTGAGGTATGCA TTTACAGAGCATTGGAATCGTCATTCATAATTTCCAGAGGTGCTAGAAATCAACTGGAGGATGGTTCTATCTCCTGCCAGGTTGGTGCTGATGGTCGGGA GTCATTGTATCTGAATAGTGGTGGGAAGAAGAGACTACTGGAGAGGAGCTCAGTGGTATTCAGAGATGGTTCGGACCCATCCTCTTATTCCGGGAAGATC ATAGAGTGCTCGTATAATTCCGAGGACCAGGTTTGGGAATGCATGCGGGTCCGTGTTGATAAGAACGCTCCAAACGAGTTCAATACCTTCAAGAAGGTGA TGAACAGTATCAAAGACAACATAACGGAGGACATCTTACTCGACGAAATCAACGAGATAATTCGCTTGCCGATGTATGCTGATAGAATAAGCAACGATAG CAGACCTCACCAGCGGCGAAGGTGA
AA sequence Show only first row Show all	>Lus10027759 pacid=23156955 polypeptide=Lus10027759 locus=Lus10027759.g ID=Lus10027759.BGIv1.0 annot-version=v1.0 MVVAMDLNASPLPEDEEDNFERHVEEYSANHEERGETSVQLARRERDERRKRLKIDNSDDRPSSVPRQAVHDQNYQSKYQKSYDKSRLPPGWLDCPPAGN EICGIVPSKVPLGEMFYEDVPPGKRYSFKQVVHNQRVSGRKIQCRGRDAVPENVAVNQFVYEVMQFLSLQKLSKKYILVHCTHGHNRTGYMIVHFLMRTQ LMSVTEAITKFAEVRPPGIYKPDYIDALYTFYHEKRQDICPPIPEWKRSSEFDLNGKAVPDDEDDGALAVPLNNNQEMDVKLTNDDVLGDDIPVDQLNTL RQICYQMLKMHMGGKTFPGSHPVSLSRDNLQKLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMKFPCRIGSDVSFDRTHHFTLLDGEMIID IVPETQKQARRYLIYDVMAINNVSVVERPFSERSKMIEKEVIEPRNYERAHITQSKNPCYDYSLEPFSVRKKGFWPLSAVKKLLKDFIPTLSHEADGLIF QGWDDPYVPRTHDGLLKWKYPEMNSVDFLFEVCIYRALESSFIISRGARNQLEDGSISCQVGADGRESLYLNSGGKKRLLERSSVVFRDGSDPSSYSGKI IECSYNSEDQVWECMRVRVDKNAPNEFNTFKKVMNSIKDNITEDILLDEINEIIRLPMYADRISNDSRPHQRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09100			mRNA capping enzyme family pro...		Lus10027759 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10002459 [exp]	7.7	0.8484
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	19.1	0.8220
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	21.6	0.8457
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	24.2	0.8198
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	25.3	0.7977
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10042871 [exp]	29.2	0.7553
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	29.6	0.8427
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	30.3	0.7817
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	31.2	0.7565
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	31.4	0.8279

Compare expression of checked genes

Lus10027759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.