Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09090 1084 / 0 DEX1 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035533 [exp] 1657 / 0 AT3G09090 1164 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G096100 [exp] 1110 / 0 AT3G09090 1226 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3) Potri.016G110800 [exp] 1101 / 0 AT3G09090 1165 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01839 [flax] [poplar] FG-GAP FG-GAP repeat
Representative CDS sequence Show only first row Show all	>Lus10027760 pacid=23156959 polypeptide=Lus10027760 locus=Lus10027760.g ID=Lus10027760.BGIv1.0 annot-version=v1.0 ATGGCAGACGGAAGTCAGCTCCAGCATTTATGCTACGCCATTGATTGCCGATATCAACAGGTATTAAGCAGCATACTTCTTGCTCTGAGTATGTTATCTT GGATTGGCGTCTTTGAGATTACTAGGGCTCAATTCCTTGCATTCTGCAGCGATGGGAAACTAGACATTGTTGTTCCTTCTTTTCTGCACTACCTAGAAGT TCTTGAAGGCTCGGATGGGGACAAAATGCCTGGTAAGTTTGGGAGGAGTTTGAGTTTTTGCATCACAACTTTTTTGAAATTGTGGGACTGGATCAATAAC ATATATCGAAATGTTTCATCAGGCTGGCCTGCATTCCACCAGTCTACGGTACATGCCAGCCCTCTCCTATATGACATCGACAAAGATGGTGTCAGAGAGA TCGCTTTGGCCACTTACAATGGGGTTGTGCACTTTTTTAGGGTTTCAGGCTACATGATGACGGATAAACTAGAGATACCTCGTAGAAGAGTTAAAAAAGA TTGGTATGTTGGCCTGAAGAAGGATCCTGTGGATCGTTCTCACCCTGATGTCCATGACGATGAGCTTATCAAGGAAGCTGCTGCTGCTGATGATGAGAAG AATACTATGCCCCAAACAACTGGAGGTACCGCCAGAACACTTGATTCAACCACTCCACTTTCTAAATCAGTGGAAAACCACCCCCCAGGAAATGGAAGTG TAACTGGTGGAAATAACACGGTTATTGGTTCGGTGGTTGATAAACCTAAACGTGATGACAATGCTCATGTTGAAGCAAATAGTACAGTGTCTACATCAGC TCAAGACACCCCGTCTGCAGAGGAGAGTACATCACATACAAATAATACAGTTAAGAATGACCTTCCTGCTAATGCATCCAATCAGGAGAATAAACCTAAA ATGAACGAGAGTGACTCAGTCATCAAACTGCCCACAAGCTCAGACAACAATTCTGGGAATGCTGAAGCTACAAAAATTGGTGAAACACATAATGCAACAA ACGCTGGACGACATCTTCTGGAAGATAATGATTCGAAGGTTTCAGAATCAGATAATGAAAAGAGCTCCGGTGATGATCATGTGGCAACTGTGGAGAATGA TGAGGGGTTGGAAGCTGATGCTGATTCATCATTTGAGTTGTTTCGTGAAACTGATGAGCTAGCTGATGAATATAGTTATGACTACGATGATTATGTTGAT GAATCAATGTGGGGCGATGAGGAGTGGAATGAAGGGCAACATGAGAAACTGGAAGACTATGTCAATGTTGATGCCCATATCTTGTCCACTCCTTTTATAG CAGACATTGATAAAGATGGCGTGTCAGAGATGATAATTGCAGTATCGTACTTCTTTGATCACGAGTACTATGACAACCCAGAACATTTGAAAGAACTCGG TGGTATTGACATTGACAAGTATGTTGCTGGCTCGATCGTGGTCTTTAATCTTGATACGAAGCAAATTAAGTGGACAAGAGAACTAGATTTAAGTACAGAC ACTGAAAACTTCCGTGCATTTATTTATTCTACTCCAACGGTGGCTGACCTGGATGGTGATGGCTATATGGACATCCTTGTTGGGACTTCATATGGGTTGT TTTATGTTCTCGATCACCGCGGCAACATCAGAGAAAAGTTTCCCCTTGAAATGGCTGAAATCCAAGGAGGTGTAGTTGCTGCTGATATAAATGATGATGG TAAACTTGAACTAGTGACTACTGACACTCATGGAAACGTTGCTGCATGGACTACACAAGGAGTGGAAATTTGGGAGACCCATCTCAAGAGCCTTGTTTCC CAGCAACCATCTGTAGGCGATGTCGATGGTGATGGGCATACTGATGTGGTTGTTCCAACACTGTCGGGGAACATATATGTTCTCAGTGGCAAAGATGGCT CAATGGTCCGGCCTTATCCATACAGAACTCATGGAAGAGTGACTAGCCAAGTTCTTCTTATCGATCTGAGTAAGCGGGGAGAGAAAAGCAAAGGGCTTAG TCTAGTGACCTCATCATTTGATGGCTACTTGTATCTCATAGATGGACCTAGCTCCTGTGCTGATGTTGTCGACATCGGCGAAACTTCGTACAGCATGGTT CTGGCTGATAACGTGGACGGTGGAGATGATCTGGACCTGATTGTCACGACAATGAACGGGAATGTCTTCTGCTTCTCCACCCCATCTCCGCATCATCCCC TCAAGGCCTGGAGATCACCTAATCAAGGACGAAACAATGTTGCGAATCGCTACAATCGTGAAGGGGTCTACGTCACCCATCCTTCAAGAGCATTCCGGGA CGAAGAAGGAAAGAACTTCTGGGTAGAGTTCGAGATTGTAGACAAACACAGGTTCCCCTCTGGGTCTCAAGCACCCTACAACGTCACTACAACCCTGTTA GTACCCGGAAACTACCAAGGCGACCGGAGGATAACTCACTCACAAATCTACGACCAGCCTGGGAAATACAAGACTAAGCTTCCGACAGTTGGAGTTAGGA CGACTGGAACCGTTATGGTTGAAATGGTGGACAAGAACGGTCTATATTTCTCCGACGACTTCTCCCTTACTTTCCACATGTACTACTACAGACTGCTCAA GTGGCTCATCGTCCTCCCGATGCTTGGCATGTTCGGGATACTAGTGATCCTTCGCCCGCAGGAAGCTGTGCCTCTGCCGTCTTTCTCGAGAAACACCAAT CTATAA
AA sequence Show only first row Show all	>Lus10027760 pacid=23156959 polypeptide=Lus10027760 locus=Lus10027760.g ID=Lus10027760.BGIv1.0 annot-version=v1.0 MADGSQLQHLCYAIDCRYQQVLSSILLALSMLSWIGVFEITRAQFLAFCSDGKLDIVVPSFLHYLEVLEGSDGDKMPGKFGRSLSFCITTFLKLWDWINN IYRNVSSGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGVVHFFRVSGYMMTDKLEIPRRRVKKDWYVGLKKDPVDRSHPDVHDDELIKEAAAADDEK NTMPQTTGGTARTLDSTTPLSKSVENHPPGNGSVTGGNNTVIGSVVDKPKRDDNAHVEANSTVSTSAQDTPSAEESTSHTNNTVKNDLPANASNQENKPK MNESDSVIKLPTSSDNNSGNAEATKIGETHNATNAGRHLLEDNDSKVSESDNEKSSGDDHVATVENDEGLEADADSSFELFRETDELADEYSYDYDDYVD ESMWGDEEWNEGQHEKLEDYVNVDAHILSTPFIADIDKDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIDKYVAGSIVVFNLDTKQIKWTRELDLSTD TENFRAFIYSTPTVADLDGDGYMDILVGTSYGLFYVLDHRGNIREKFPLEMAEIQGGVVAADINDDGKLELVTTDTHGNVAAWTTQGVEIWETHLKSLVS QQPSVGDVDGDGHTDVVVPTLSGNIYVLSGKDGSMVRPYPYRTHGRVTSQVLLIDLSKRGEKSKGLSLVTSSFDGYLYLIDGPSSCADVVDIGETSYSMV LADNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKAWRSPNQGRNNVANRYNREGVYVTHPSRAFRDEEGKNFWVEFEIVDKHRFPSGSQAPYNVTTTLL VPGNYQGDRRITHSQIYDQPGKYKTKLPTVGVRTTGTVMVEMVDKNGLYFSDDFSLTFHMYYYRLLKWLIVLPMLGMFGILVILRPQEAVPLPSFSRNTN L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	0	1
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	2.6	0.9141
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	4.7	0.9050
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	5.7	0.8603
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	6.0	0.8837
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	6.7	0.8990
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	7.3	0.9043
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	7.7	0.8973
AT5G24260			prolyl oligopeptidase family p...		Lus10022408 [exp]	9.7	0.8172
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	11.8	0.8857
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	12.0	0.8998

Compare expression of checked genes

Lus10027760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.