Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38060 619 / 0 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 468 / 4e-163 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT2G29650 305 / 4e-101 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 306 / 1e-99 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT5G20380 210 / 7e-63 PHT4;5 phosphate transporter 4;5 (.1) AT5G44370 171 / 1e-48 PHT4;6 phosphate transporter 4;6 (.1) AT4G25220 49 / 6e-06 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT1G30560 43 / 0.0004 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035532 [exp] 768 / 0 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10040703 [exp] 437 / 1e-150 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 440 / 3e-146 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018218 [exp] 304 / 8e-99 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 305 / 4e-96 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 281 / 3e-89 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 219 / 1e-63 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10013836 [exp] 189 / 9e-56 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1) Lus10026551 [exp] 188 / 3e-55 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111000 [exp] 645 / 0 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G248200 [exp] 438 / 3e-151 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.001G249800 [exp] 313 / 1e-102 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 302 / 1e-97 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 300 / 1e-97 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.018G121600 [exp] 207 / 1e-61 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 202 / 1e-59 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.009G168200 [exp] 165 / 1e-46 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 76 / 3e-16 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10027761 pacid=23157010 polypeptide=Lus10027761 locus=Lus10027761.g ID=Lus10027761.BGIv1.0 annot-version=v1.0 ATGTCCGTCGCCATCGTCCCCCTCGCTGCCAAGTACGGATGGTCAAGTGCCTTCCTTGGCATTGTACAGTCTTCGTTTCTGTGGGGATATATATTCTCGT CGCTGATTGGAGGAGCATTAGTGGACAAATATGGAGGGAAAAGGGTGTTAGCTTGGGGAGTTGGCTTATGGTCTTTCGCCACTGTTCTGACTCCATGGGC TGCTAACCATTCAACTCTCAGTCTTTTGGCAGTGAGAGCCTTCTTTGGTCTTGCTGAAGGTGTTGCTCTTCCCGCCACCACTACCCTTTTGTCAAGGTGG TTCCCAAGTAATGAACGTGCAACTGCTGTGGGGATCTCAATGGCCGGATTTCATCTGGGGAATGTTGCAGGGTTACTGTTGACACCAATCATGTTGTCGA CAGTTGGGATTGCTGGACCTTTTGTGTTGTTCTCGTCTCTCGGGTTGGTTTGGGTAGCTACGTGGGCTGGTCGAGTGACGAATGATCCAAAGGATAGCCA GTTTGTGAAAAGATCGGAGTTGAAACTGATCCAAGCTGGTAAAACTGATTCCAGCAACGATGGTAAGAGTAACCAGCTTCCTTCTCTTGGGCAGCTGTTG TCAAAGTTGCCCTCTTGGGCCATCATACTTGCAAATGTAACCAACAATTGGGGATACTTCGTTCTTCTCTCGTGGATGCCTGTGTATTTCAAGACTGTGT TTAATGTGAACTTGAAGCAAGCCGCTTGGTTCAGTGCTGTTCCATGGGGGTCAATGGCAATCTCCGGTTACGTAGCAGGAGCAGCATCTGATTCACTTAT TAAAGCTGGGTATTCCTTGACACTAGTAAGGAAAGTCATGCAGTCAATTGGTTTCATTGGACCTGGATTGGCACTTCTTGCTCTGAACTTTGCCAAAACA CCAGTCACTGCATCTATCTTCATCACAGCAGCTCTCAGCTTGAGTTCTTTCAGCCAAGCTGGATTTCTCCTCAACATACAAGACATTGCGCCACGATGTG CAGGGTTTCTTCACGGAATCTGCAACTCAGCTGGGACATTAGCAGCAATAGTGAGTACAATCGGAACGGGGTATTTCGTGGAATGGCTAGGATCTTTCCA GGCTTTCCTGACGGTAACGGCAGGGCTATACTTTGCCACTGCCGTGTTCTACAATATTTATGCAACAGGAGACCAAGTTTTCTGA
AA sequence Show only first row Show all	>Lus10027761 pacid=23157010 polypeptide=Lus10027761 locus=Lus10027761.g ID=Lus10027761.BGIv1.0 annot-version=v1.0 MSVAIVPLAAKYGWSSAFLGIVQSSFLWGYIFSSLIGGALVDKYGGKRVLAWGVGLWSFATVLTPWAANHSTLSLLAVRAFFGLAEGVALPATTTLLSRW FPSNERATAVGISMAGFHLGNVAGLLLTPIMLSTVGIAGPFVLFSSLGLVWVATWAGRVTNDPKDSQFVKRSELKLIQAGKTDSSNDGKSNQLPSLGQLL SKLPSWAIILANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAVPWGSMAISGYVAGAASDSLIKAGYSLTLVRKVMQSIGFIGPGLALLALNFAKT PVTASIFITAALSLSSFSQAGFLLNIQDIAPRCAGFLHGICNSAGTLAAIVSTIGTGYFVEWLGSFQAFLTVTAGLYFATAVFYNIYATGDQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	0	1
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	1.0	0.9879
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	1.4	0.9729
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	4.2	0.9674
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	6.7	0.9593
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	6.9	0.9600
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036626 [exp]	7.2	0.9517
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	8.1	0.9583
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	8.9	0.9658
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	10.4	0.9624
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	10.8	0.9497

Compare expression of checked genes

Lus10027761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.