Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027765 [exp] 372 / 2e-119 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10027773 [exp] 287 / 4e-89 ND 56 / 7e-08 Lus10027766 [exp] 99 / 1e-21 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10033831 [exp] 77 / 1e-14 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10035529 [exp] 55 / 3e-08 ND 39 / 0.001 Lus10003566 [exp] 46 / 5e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044200 [exp] 64 / 2e-10 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027763 pacid=23157099 polypeptide=Lus10027763 locus=Lus10027763.g ID=Lus10027763.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTGATGGATGATCTGAAGCTGGCTGAAGCTAACCAAGGGAGTTTGTTCAAGTTGATGAACGAACTCGAGTCGAAATCTTCATTGATCCTTT CCTTCGCCCTTCACTGGAAAGACATAGACTTGCAGTATCACTCCATAAGGGATGCATTACACCAACAAGCTCAAGAACTCGCCTTGCAAAGAACCAAAAT GGAGATGGATTTGCTTGATTCGCAGATTCAGATGAAGGAGAGAGATTTGATGTTTGTTCGAGAAAGGGTCGAACAGTGCGAAGCTAAACTCGAGATGAAA GAGATGGAGATGGGGGTTTTGGAGAAGGCACTGACTAAGATCCGCAAGCAGATATGTGAGAAGGAAGGAGAAAGAGATTGTCTTCAGAAGTCTATCGATT CTAAGGCGAGGGAGATAGAGGCAAAAGATGATTGCTTGAGTCAGATAAGGAACCTTATTAGCCAGTGTAATGATGAACTTGAATCGAAAGAGAAGGAATT GAATGTGGTTGTTGAGAAGCTTCAGGGTAATGAGAGCAACATGGAACAGCGTACTCAGCAACTTGAGGTGAAAGAGAAGCTGTTGGGTTTCATGGAAATC ACATTGGATGAGCTTGAGCTGGAAGTTAGCGGGAAAAGGGAAGAAATTTGCTCATTAGACAAGTCTCTTGCTCTAAGACATGATGATATGGAGATACTAG GGTATTTGGTTACGAATCGTACTTCCGAGCTCGAGGCAAAAGAGAAAGAGTTGGCTGAGGTAAGTGCATTGGTCAGTGAACTCAAAGCTGAGTGTGAATT GAATGGGAGGCATCTGATTACCGTGGTAGACAAGCTTTCGGGTTGTAGGTCTCAACTCGAGGAGAAAGAGACCTCGATTGTAAACCTCAGTGCTGAATGT GAATTGACAGAGGAACATTTGAGTGTAGAGGTTGGCGAGCTTCGGGTGAAGGAGAAGGAAATGAGTGTTGTTCAATGTGAGTTGGCTGCCGTAAAGGACT TGATGACCGAATGCAAAGCTCAGCTCGAATCGAGAGAGGAGCAGTTGAGTTCAGTGGTTGAGGAGCTTGAAGAAAAACAACGACTACTGGAATTTGTAGA CAAGGCATTGGTAGTTAATATCGAAGACGTCTCTGCTAAAGAGAATGAACTATGTGCATTACAGAAACAAGTTTCAGTTGTTAATTCTGAGCATGAGCAG AAGGGGAAAGAGTTGGATCAAGTGAAGAAGTTGATCATTAAGTCCAATGCTGAACATAAGTTGAAGCAGGAGAGAATTCAGTTACTCTGTAAAGAGATTG ACATGAAGGAAACTATACTGTGTGGTGTCAGAACTTCCATGGAGGAATTTGATAGGCGGCTGCTGACATATCATCGCCGTCGTCGAAAGATTACTAGCAC CTAG
AA sequence Show only first row Show all	>Lus10027763 pacid=23157099 polypeptide=Lus10027763 locus=Lus10027763.g ID=Lus10027763.BGIv1.0 annot-version=v1.0 MEKVMDDLKLAEANQGSLFKLMNELESKSSLILSFALHWKDIDLQYHSIRDALHQQAQELALQRTKMEMDLLDSQIQMKERDLMFVRERVEQCEAKLEMK EMEMGVLEKALTKIRKQICEKEGERDCLQKSIDSKAREIEAKDDCLSQIRNLISQCNDELESKEKELNVVVEKLQGNESNMEQRTQQLEVKEKLLGFMEI TLDELELEVSGKREEICSLDKSLALRHDDMEILGYLVTNRTSELEAKEKELAEVSALVSELKAECELNGRHLITVVDKLSGCRSQLEEKETSIVNLSAEC ELTEEHLSVEVGELRVKEKEMSVVQCELAAVKDLMTECKAQLESREEQLSSVVEELEEKQRLLEFVDKALVVNIEDVSAKENELCALQKQVSVVNSEHEQ KGKELDQVKKLIIKSNAEHKLKQERIQLLCKEIDMKETILCGVRTSMEEFDRRLLTYHRRRRKITST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27220			Frigida-like protein (.1)		Lus10027763 [exp]	0	1
AT5G19090			Heavy metal transport/detoxifi...		Lus10029942 [exp]	6.3	0.6807
AT5G48385			FRIGIDA-like protein (.1)		Lus10004131 [exp]	12.8	0.6731
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	15.6	0.6890
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	27.4	0.6666
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10020323 [exp]	32.8	0.6312
AT4G37810			unknown protein		Lus10011591 [exp]	34.5	0.6649
AT5G17510			unknown protein		Lus10024979 [exp]	34.5	0.6441
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	40.5	0.6642
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	50.1	0.6372
AT1G05070			Protein of unknown function (D...		Lus10015556 [exp]	58.0	0.5588

Compare expression of checked genes

Lus10027763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.