Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09580 508 / 3e-178 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035530 [exp] 814 / 0 AT3G09580 543 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033264 [exp] 0 / 1 AT3G09580 87 / 6e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344800 [exp] 563 / 0 AT3G09580 540 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10027764 pacid=23156924 polypeptide=Lus10027764 locus=Lus10027764.g ID=Lus10027764.BGIv1.0 annot-version=v1.0 ATGACTCTCCTCGTTTACCCAATCTCCATCTCTCACCGCGTTACCTCCTCCGGCTGCCGTCAAACCACCGGCATTTCAGTCTGCTGCTCTTCTTCCACCA ACGTCAATCCCTCCCATGCCAACAAAACCGGCGTCGTCGTTGTCGGAGCCGGCCTCGCCGGTCTCGCCGCCGCAACCCACCTCCACTCCCGCAACATTCC CTTCCTCCTCCTCGAAGCATCCGACGCCGTCGGTGGCCGTGTACGTACTGACCTCGTCGACGGCTTCCTCCTCGACCGAGGCTTCCAAATCTTCATCACC GCTTACCCAGAAGCCCGAAAGCTCCTCCACTACCCAGAACTGGATCTCCGCAAATTCTATTCAGGTGCCCGGGTTTACTTCGACGGCCGGTTCCACACCG TCGCCGACCCTCTCCGTCATTTCTCCGATTCCATCCAGTCGTTGACTAACCCAATCGGGTCGGTTCTCGACAAGCTGCTTATAGGCTCCACCAGGCTGGG TGTTATGACCAAATCGGAGGATCAAATATTCCGCTCCGACGAGATCCCTACCTCGGAGCTCTTGAAGAGAATCGGATTCTCCGATTCTATCATAAGGAGA TTCTTTAAGCCCTTCTTCGGCGGGATTTTCTTCGATCCGGAGCTCGAAACCACTTCCAGACTGTTCGAGTTCATCTTCAAATGTCTGGCTCTCGGCGAAA ATACCCTTCCGGCGAAGGGAATCGGAGCAATTCCTAACCAATTGGCGTCAAAATTACCAACCGGTTCCATCCTATTGAACTCCAAAGTCGCCTCCATTAA TATCGAGGAATCTTCGTTGAGATTGGACAGCGGCGAGATTTTCCAAAGCGAATTTGGATTGATCTTGGCAGTGGATGAGCCTCAATCGATGAATCTGCTG GCCAGAGAAAAGGAACAGGATATTACGGTTCGACCTTCTCGTTGTACGGTTTGTGTATATTTCTCGGCCGACCGTGGTTCGGTTCCGGTCGAGGAACCGG TTCTGTTTCTCAACGGTTCGGGTGAGGGCATTGTTAATAACATGTTCTTTGCCACCAATGTGGCTTCGTCATACGCTCCTCCCGATAAGGTGTTGGTCTC CGTGTCGTTGATCGGGTTGTTCGACGAGGAGTCGGATGAAAATCTAGCAGCGCGGGTTGTTACGGAGCTTTCGGGTTGGTTCGGCGAGTCTGTGGTTGGG TCGTGGAAGTACTTGAGAACGTATCGGATAGGGTATGCACAACCCAATCAAAGCCCTCCGACTGATATGAGCAAACGCCACCGTATTGAGCCTGGTTTGT ACGTCGCCGGAGATTACTTGACTTCAGCGACGTTTGACGGGGCGCTGCTATCTGGAAGGAAAGCCGTTGAAGCATTGGTTAGAGATGTATATAAGAGCTG A
AA sequence Show only first row Show all	>Lus10027764 pacid=23156924 polypeptide=Lus10027764 locus=Lus10027764.g ID=Lus10027764.BGIv1.0 annot-version=v1.0 MTLLVYPISISHRVTSSGCRQTTGISVCCSSSTNVNPSHANKTGVVVVGAGLAGLAAATHLHSRNIPFLLLEASDAVGGRVRTDLVDGFLLDRGFQIFIT AYPEARKLLHYPELDLRKFYSGARVYFDGRFHTVADPLRHFSDSIQSLTNPIGSVLDKLLIGSTRLGVMTKSEDQIFRSDEIPTSELLKRIGFSDSIIRR FFKPFFGGIFFDPELETTSRLFEFIFKCLALGENTLPAKGIGAIPNQLASKLPTGSILLNSKVASINIEESSLRLDSGEIFQSEFGLILAVDEPQSMNLL AREKEQDITVRPSRCTVCVYFSADRGSVPVEEPVLFLNGSGEGIVNNMFFATNVASSYAPPDKVLVSVSLIGLFDEESDENLAARVVTELSGWFGESVVG SWKYLRTYRIGYAQPNQSPPTDMSKRHRIEPGLYVAGDYLTSATFDGALLSGRKAVEALVRDVYKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	0	1
AT5G52960			unknown protein		Lus10027566 [exp]	2.8	0.9291
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	3.7	0.9294
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	4.7	0.9265
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	5.0	0.9414
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	5.8	0.9382
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	7.3	0.9315
AT4G39110			Malectin/receptor-like protein...		Lus10017478 [exp]	7.6	0.8963
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	8.7	0.9241
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	9.2	0.9318
AT1G16080			unknown protein		Lus10041625 [exp]	11.3	0.9234

Compare expression of checked genes

Lus10027764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.