Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 78 / 1e-14 FRIGIDA-like protein (.1) AT5G27230 78 / 2e-14 Frigida-like protein (.1) AT3G22440 75 / 1e-13 FRIGIDA-like protein (.1) AT4G14900 69 / 7e-12 FRIGIDA-like protein (.1) AT1G31814 66 / 9e-11 FRL2 FRIGIDA like 2 (.1) AT5G27220 62 / 2e-09 Frigida-like protein (.1) AT5G16320 56 / 1e-07 FRL1 FRIGIDA like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027773 [exp] 546 / 0 ND 56 / 7e-08 Lus10027763 [exp] 321 / 6e-100 AT5G27220 53 / 4e-07 Frigida-like protein (.1) Lus10027766 [exp] 328 / 1e-95 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10035523 [exp] 178 / 4e-52 ND / Lus10035529 [exp] 145 / 2e-39 ND 39 / 0.001 Lus10033831 [exp] 133 / 2e-31 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10033829 [exp] 117 / 5e-30 ND / Lus10002146 [exp] 87 / 3e-17 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 87 / 3e-17 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044200 [exp] 201 / 6e-53 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.005G043900 [exp] 112 / 7e-25 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 108 / 3e-24 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044000 [exp] 108 / 8e-24 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.007G050800 [exp] 95 / 6e-20 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 91 / 1e-18 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 88 / 8e-18 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 76 / 6e-14 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.007G113400 [exp] 43 / 0.0001 ND / Potri.005G044050 [exp] 44 / 0.0003 AT5G27230 52 / 3e-07 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10027765 pacid=23157066 polypeptide=Lus10027765 locus=Lus10027765.g ID=Lus10027765.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTGATGGATGATCTGAAACTGGCTGAAGCTAAACAAAAGAGTTTCTTCAATTTGATGAACGAATTTGAGTCGAAATCTTCCTTGATCCTTT CGTTACCCCTTCACTGGAAAGATTTAGACTCGCAGTATGAGTCGATAAGGGAGGCATTACGCAAACATGTGGAAGAACTAGCCCTGAAAAGAACCGAAAT CGAAGAAGCTGGAAAGAAGGTCGAGCTACAAGAAATGGAGGTTCAGAAGCTGGAAACCGCTCATGGGGTTCTAGATGCAGCCAAACATAAGGAAAGGGAA ATGGGTTTGCTTGATTCACAGCTTCAGATGAAGGAGAGGGATTTGAGGTTTGTTCGAGAAAGGGTAGAAGAGTGCGAAGCTGAACTCGAGAGGAAAGAGA TGGAGATGAGGGTTTTGGAGAGGACGCTGACTAAGACCCGGAAGCAGATATGTGAGAAGGAAGGAGAAAGGGATTGTGTTGAGAAGTCTATCGAGTTGAA TGCGAGGGAGATGAGGGCAAAAGATGATTGCTTGGGTCAGATAAGGAACCTTATCAGCAAGTGTAATGAAGAACTTGAATTGAAAGAGAAGGAATTGTGT GAGCTTGAGATGAAAGTTAGCAGGAAAAGAGAAGAACTTTGTTCCTTACAGAACTCTCTTGCTCTAAGACACGATGACATGGAGAAATCAGGGAATTTGG TTTCGAATCGTACTTCTGAACTCGAGTCAAAAAAGAAAGAGTTGGGTGAGGTAAGTGCCATAATCACTAAACTCAAATCTGAGTGTGAATTGAATGAGAG ACATCTGATTACCGTGGAAAAAGAGAGAAATTTGGCTGAGGTCTGTGAATTGAAAGACAGAGAGTTTGCTGCCTTAAAGAACTTGATGACCGAGTGCAAA GCTCAGCTCGAATCAAAAGAGGAGCAGTTGAGTTCAGTAGTTGAGGAGCTTGAGGAAAAACAACAACAACTGGAATTTGTAAAAAACGCCTTTGAAGTTA ATATTGGAGACCCCTCTGATAAAGAGCAAGAACTATGTTTATTAGAGGAAAAAGTGCAGAACGCTGTAAATGCAGTTTCAGTTCTTAATTCTGAACATAA GTTGAAGGAGGAGGAGTTGGATGAAGTGAAGAAGTTGATCATTATGTCCAATGCTGAGCATAAATTGAAGGAGGAGAAAATTCAGTTACTCTGTAAAGAG ATTGACCTGAAGGAAACTGAATTGTGTGGTATCAAAGCTTCCATTGAGGAATGCCTCAAGGATTTGGATATGAAGAAGGAAGAAGTTCATGCAACCAGAA ACTTGTGTGAGAAGCAACACGAAGATATTTATTTGAACCAGGTTCGTCTTGATTCTGTTTGTGAGATGGTTAAGGAATATGATGAAGAACTTGAATCAAA GAAGGAGCTGTATTTTTTGAAAGAGAATCTTCAAGCCTCTGTTGAGAATCTTGAATTGAAAGAGACTGTGCTAAGTAGTATTGAAACATCCATCAAAGCT CGAGAGAAAGTGCTTGAATCAATGAAGGAGCAGACAATTTCCATAAAGACGCTGATTGAAGAATTCGCTCTTGCTCTCGAGTCTAGCGTTGAGAAGACTT TCGACGTGGCTGGAGAACAAATGAAGCAATGCTGCGGCAGGCTTGAATCGAGAAAAACGGAGCTTATTGAATTGCGAAAAAAGCTTACAGAGGAAAGAAA GGATGTGGAAGAACATGCTGTAGCAGTTGAAACGGAGAGGTTGGAGCTTCAGAAAGAAGTTGAACAGTTCAAATTGAAAGAAAAACAATTGGTTTCAAAA GAAAAACTCATGGAAGAACGAGTTGCAGAAATAGAAGCGAAAGAGAAGCAACCAAGCAACTTGTTGGATGAGCAGAGAAACAAACAGCAACCTGAATTTG CAAAAGAATTAGTTGGAGCCATTGGCTGTGATAGTAGCACCAGTCCAGATTCCCTCATATCGAAGCCATCACAGCCGTGCTTGACTGACATTGCAGTCTC TGCTGTTTCTTCCTCATCAGATCCAGCACTTGTGCTATTTCACCTGTTAGAACAGTCTTTTTCTCGTCCTGCTGCGGATGATATAACTGCTGGTAGGAGT CGGATTCTTTTTCTGGAGCAGTTCATGTCAGTCTCGCAAACTGTCCAGCCCGAGTTGAAAGAAGAAGCAAAAAACCTCGCTGATACTTGGAGAGGAAGTT TAAGTCATTGTTCTTCAACAGATGATGTATTGGCATACTTGTTGTTTTTGGCTGCATTTGGCATCAGCTCTCATTTCAAAGCAGAGGATACACTTGAATT AGTTTCCATGATTGCTCACAGTGACAGGGGCCCCGAGTTATGTCGCTCTCTTGGTCTTGCCAAGTGCATACCAGGACTGATAGTGAACCTGTGTAAGAAC AACAAGCATATGGACGCCATTAGATTTAGTTTGGCATTCAACATAGTTGCGAAATTCCCACCAGACGTGATCCTCAGAGACTATCTGAAGAAAACAAGGA TCTTTGAGGACGGCATGGACTTACTTGAGTCCCAACATCAGGCCTTGAACATCCATCTTGATTCCTTGAAAGCTTTATCGCAAGGTGTGGCCAGACTTGG GCATGATCCAGGTTTCGTAATCAGGATGATCAGCCACCATCTCGAGGTTCTGGAAACTCATTTGGTAAAGAAAAGAAGCTGCTTGCTGGCGGCTGGTCTT GTTATAAAGAGACCGAATCTGAACGTTGGCGGTACAACAGTTTATGGGCACAAGTGGCCACAGCAGGCAACGAACTTGACCAGAGAAGAGCTGAGTAACA AGCGGCAGAAGCGCTAA
AA sequence Show only first row Show all	>Lus10027765 pacid=23157066 polypeptide=Lus10027765 locus=Lus10027765.g ID=Lus10027765.BGIv1.0 annot-version=v1.0 MEKVMDDLKLAEAKQKSFFNLMNEFESKSSLILSLPLHWKDLDSQYESIREALRKHVEELALKRTEIEEAGKKVELQEMEVQKLETAHGVLDAAKHKERE MGLLDSQLQMKERDLRFVRERVEECEAELERKEMEMRVLERTLTKTRKQICEKEGERDCVEKSIELNAREMRAKDDCLGQIRNLISKCNEELELKEKELC ELEMKVSRKREELCSLQNSLALRHDDMEKSGNLVSNRTSELESKKKELGEVSAIITKLKSECELNERHLITVEKERNLAEVCELKDREFAALKNLMTECK AQLESKEEQLSSVVEELEEKQQQLEFVKNAFEVNIGDPSDKEQELCLLEEKVQNAVNAVSVLNSEHKLKEEELDEVKKLIIMSNAEHKLKEEKIQLLCKE IDLKETELCGIKASIEECLKDLDMKKEEVHATRNLCEKQHEDIYLNQVRLDSVCEMVKEYDEELESKKELYFLKENLQASVENLELKETVLSSIETSIKA REKVLESMKEQTISIKTLIEEFALALESSVEKTFDVAGEQMKQCCGRLESRKTELIELRKKLTEERKDVEEHAVAVETERLELQKEVEQFKLKEKQLVSK EKLMEERVAEIEAKEKQPSNLLDEQRNKQQPEFAKELVGAIGCDSSTSPDSLISKPSQPCLTDIAVSAVSSSSDPALVLFHLLEQSFSRPAADDITAGRS RILFLEQFMSVSQTVQPELKEEAKNLADTWRGSLSHCSSTDDVLAYLLFLAAFGISSHFKAEDTLELVSMIAHSDRGPELCRSLGLAKCIPGLIVNLCKN NKHMDAIRFSLAFNIVAKFPPDVILRDYLKKTRIFEDGMDLLESQHQALNIHLDSLKALSQGVARLGHDPGFVIRMISHHLEVLETHLVKKRSCLLAAGL VIKRPNLNVGGTTVYGHKWPQQATNLTREELSNKRQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	5.3	0.9316
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	5.3	0.9181
AT2G34190			Xanthine/uracil permease famil...		Lus10029238 [exp]	6.9	0.9049
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	8.1	0.9219
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	8.7	0.9214
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	9.9	0.9093
					Lus10030682 [exp]	10.0	0.9066
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	13.6	0.8914
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	16.1	0.9179
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	16.2	0.9077

Compare expression of checked genes

Lus10027765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.