Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01270 822 / 0 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) AT4G21670 555 / 4e-180 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1) AT5G54210 43 / 0.001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018479 [exp] 593 / 0 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10011195 [exp] 574 / 0 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10027773 [exp] 320 / 1e-94 ND 56 / 7e-08 Lus10027765 [exp] 259 / 1e-71 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10035523 [exp] 130 / 4e-35 ND / Lus10035529 [exp] 82 / 3e-17 ND 39 / 0.001 Lus10027763 [exp] 82 / 1e-15 AT5G27220 53 / 4e-07 Frigida-like protein (.1) Lus10033831 [exp] 44 / 0.0009 AT5G27220 153 / 2e-37 Frigida-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114600 [exp] 1023 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.004G040000 [exp] 619 / 0 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.011G049400 [exp] 612 / 0 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.006G099302 [exp] 464 / 9e-153 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099402 [exp] 289 / 4e-90 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.005G044200 [exp] 64 / 7e-10 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.007G113400 [exp] 47 / 6e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10027766 pacid=23156899 polypeptide=Lus10027766 locus=Lus10027766.g ID=Lus10027766.BGIv1.0 annot-version=v1.0 ATGTCTCGGGGAACTGGACACTGTTCCGGTGCCGACGACGACGGAGCAGAATTTCATGTTCCCGAACAACGAGATACGCATCCACCACATATCACAGAGC GGCCGGTTTTGGTGCCCCTCCACCGCCCCTCCCCACTCTCTCTCCCCCCTCCTCCCCATCACATCAAGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCATCCACCACATATCCCAGAGCGGCCGTTGCTTG CCGCTCTCAGTGCTCCAGACTATCTCTTCCTACTCCGTCCGATGCAAGCTGGAGTCGACGTCGTCTCCCGTCGAGCAGCCGCATTTGATCAACCTTCACG CCTCCTGCTTCCATGAACACAAGACGGCTGTGGTTTTGATAGGAAATGAAGAGATTCACTTAGTGGCAATGCCGAGTAAGCAGAAGAAGTTTCCTTGCTT CTGGTGCTTCGCGGTTCCATTAGGAATCTACAGTTCGTGCGTCACTATGCTTGATATGAGATGCCTCTCGATCGTGTTTGATCTGGACGAGACGCTTATT GTGGCAAACACGATGAAGTCGTTTGAAGATCGGATGGAAACTTTGAAAGCATGGCTCTCCCGCGAGATGGATCCTGTGAGGATATCGGGGATGTCTGCGG AGCTGAAGCGATATATGGAAGATAGGATGTTGTTGAAGCAGTATATAGAGAATGATTGTGTAATTGATGGTGGGAAGGTGTTTAAGGCTCAGGTAGAAGA AGTTCCCCGTGTATCGGATGCCCATGAGAAAGTTGTGAGACCCGTGATTCGACTGCAAGAACGGAATCTCGTCTTGACTCGTATAAATCCTGAGATTCGT GACACTAGTGTGCTAGTGAGATTACGACCTGCATGGGAGGATTTGAGAAGCTACCTGACGGCAAAAGGTCGCAAACGGTTTGAAGTGTATGTGTGCACTA TGGCTGAAAGGGATTATGCCCTGGAAATTTGGAGGCTTCTTGATCCTGGGTCTCACCTAATAAGCTCCAAGAAGTCCTTGTTGAATGTTTTTCAAGATGG AGTTTGCCATCCTAAGATGGCGATGGTAATTGATGACCGGGCAAAGGTTTGGGAAGACAAGGATCAACCTCGAGTCCATGTTGTTCCTGCATTCTCTCCT TATTATGCTCCTCAAGCAGAGACAGCAAATGCAGTCCCTGTTCTTTGTGTGGCAAGGAATGTGGCATGCAACGTCAGAGGATGTTTTTTCAAAGAATTTG ATGAGATTTTGATGCGGAGGATTTTGGAAGTCTTCTATGAAGATGAAATGGTAACTATGCCTCCTGCTCCTGATGTGAGCAACTACATGATGTCAGAGGA TGCTGGTTTTGTACCTAATGGTATCAATAATGCTCCTATCAGTGAAGGAATGAATGGTGTAGAAGTTGAAAGGAGAATGAACCAATCCGAAGAGAGGACT ACCAAGGATGGAGTTTCTTATCCAACTACAAGCGGCACTGATATGAGATCTGATACTTCCCAACCACCTCTTGCTATAAATCCAAGTCTCGTATGCCCAG GACCTTCTATACCTTCTCAAAAACCTAGTCTGCTTGGAGCTCCTGTTAGACGAGATATGAGAAATCAGAACTCAGGACAGCCACCACTGTTATCTCGAGT ACCTGCACCATCCTTCGTACAGCCACAGGGTGGTTGGTTGGTCGAAGATGATGTTAGCAAAGTCAATGCAAATAGTCGACCATTAGGTATAGTACAAGAA CCTGAGACCCTAAAAGCAGATAGGCAGCGGACACTCCCAAATTCTTCACAAGTAAAGAGTGAAGAGGCTTATTTTGGCCCTGATACTCAAAAACAAAATG TTAGTATTCCCCTGAACGCAGGGTGTACTAATGGAAGAGACTCTCAATCAGAACCTGGAAAGGTGAACGTGCAATCGTCCCACTTGTATATTGGAGTTCT CCAAGAAATTGGGCGGCGGTGCAGCTCAAAGGTTGAATTCAAATCTGTGGTTAGCACCAGTAAGGACTTGCAATTTTCTGTTGAGGTTCTGTTCACGGGC GAGAAGATAGCTGTTGGAATGGGTAAAACACGCAAGGACGCGCAGCATCAAGCAGCCGAGAATGCCCTCCTAAAGCTTCAAGAGAAATATTTAGCACACG TTACACCTCGTAGGGGAGCAGTGGACCGTGATTTCGATAAACTCTCTCTTGCAAACGAAAACGGATTCCTTTGGGAGGTGATCAATCCCGGACCCGGTGA AGCAGCACTGCAGGAACACGGCATACCTAAAGAGGAGAATCCTGAGGACTTGATGACCGAATGCAAAGCTGAGCTTGAATCGAGAGAGGAGCAGTTGAGT TCAGTGGTTGAGGAGCTTGAGGAAAAACAACAACTACTGGAATTTGTAGAAAATGCAGTGGTAGTTAACATCGAAGACATCTCTGCTCAAGAGAAAGAAC TATTTAAATTACAGAAAGAAGTTTCAGTTCTTAATTCTGAGCATGAGGAGAAGGGAAAGGAGTTGGCTGTGTTACAGGAGAAAATTTGGTTATTCCGTAA AGAGATTCGCACGAAGGAAACTGAATTGTGTGGTATCAAAGCTTCCATTGAGGAATGCATCAAGGATTTGGATATGAAGAAGGAAGAACTCGATGCAACC GAAAACTTGTCTGAGAAGCAACACGAAGAGATTTATTTGAACCAGTTTCGTCTTGATTCTATTAGTGAGTTGGTTAAGGAATATGATGAAGAACTTGAAT CGAAGGAAAAGGAGCTGGATTTTGTCAAAGAAAAACTTGAATTGAAAGAGACTGCGCTAAGTAGCATTGAAACATCCATCAAAGGTCGAGACAAAGTGCT CAGAGTGAAGAAGAATCTGCATACTTTTATTCAATCAAAGATAAACGAGTGCAGCAAAGAGCTTGAATCAATGAAGGAGCAGAAAATTTCCATGAAGACG TTGATTGAAGAATTCGCACTTGCTCTCGAGTCTAGTGTTGAGAAGACTGTCGACGTGGCTGGAGAACAAATGAAGCACTGCTGCTACAGGCTTGAATCGA GAAAAATGGAGCTTATTGAATTGCGAAACAAGCTTACTGAGAAAAGAAAAGATGTGGAAGAACGTGCTGTAGCAGTTGAAACGGAGAGGCAGGAGCTTCA GAAAGAAGTTGAACGACTGAAATTGAGAGAAGAAGAATTGGTTTCGAAAGAGAAACCCATGGAAGCGAAAGAGAAGCAACTAAGCAACTTGTTGGACGAG CAGAGAAACAAACAGCAACCTGAAACTGGAAAAGAATTCGTTGAGAGCGAATTGGAATCTCCATCATCTTGGCAGTACAACGGGGCACAACTGGCCATGG CAGTCAGTAAATTTGGCCGGAGAAGAGCTGAGGAACAAGCGGCAGAAGCGCTAATTAACATCGGAGGATGGGTTATGAGTTATGTAGTGACGGAGTTTCG TTTGATAACCATTATAGACGTAGTGTATAGGCTTAAATCCCCAGTATGTCGCAACCTTTTGGGAACTAATCCGTGGGATACAGTTCGCCCTTCTAGGATT CTCCTAACTTGGCTGCTGTGGTGTCTGAGATAA
AA sequence Show only first row Show all	>Lus10027766 pacid=23156899 polypeptide=Lus10027766 locus=Lus10027766.g ID=Lus10027766.BGIv1.0 annot-version=v1.0 MSRGTGHCSGADDDGAEFHVPEQRDTHPPHITERPVLVPLHRPSPLSLPPPPHHIKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIHHISQSGRCL PLSVLQTISSYSVRCKLESTSSPVEQPHLINLHASCFHEHKTAVVLIGNEEIHLVAMPSKQKKFPCFWCFAVPLGIYSSCVTMLDMRCLSIVFDLDETLI VANTMKSFEDRMETLKAWLSREMDPVRISGMSAELKRYMEDRMLLKQYIENDCVIDGGKVFKAQVEEVPRVSDAHEKVVRPVIRLQERNLVLTRINPEIR DTSVLVRLRPAWEDLRSYLTAKGRKRFEVYVCTMAERDYALEIWRLLDPGSHLISSKKSLLNVFQDGVCHPKMAMVIDDRAKVWEDKDQPRVHVVPAFSP YYAPQAETANAVPVLCVARNVACNVRGCFFKEFDEILMRRILEVFYEDEMVTMPPAPDVSNYMMSEDAGFVPNGINNAPISEGMNGVEVERRMNQSEERT TKDGVSYPTTSGTDMRSDTSQPPLAINPSLVCPGPSIPSQKPSLLGAPVRRDMRNQNSGQPPLLSRVPAPSFVQPQGGWLVEDDVSKVNANSRPLGIVQE PETLKADRQRTLPNSSQVKSEEAYFGPDTQKQNVSIPLNAGCTNGRDSQSEPGKVNVQSSHLYIGVLQEIGRRCSSKVEFKSVVSTSKDLQFSVEVLFTG EKIAVGMGKTRKDAQHQAAENALLKLQEKYLAHVTPRRGAVDRDFDKLSLANENGFLWEVINPGPGEAALQEHGIPKEENPEDLMTECKAELESREEQLS SVVEELEEKQQLLEFVENAVVVNIEDISAQEKELFKLQKEVSVLNSEHEEKGKELAVLQEKIWLFRKEIRTKETELCGIKASIEECIKDLDMKKEELDAT ENLSEKQHEEIYLNQFRLDSISELVKEYDEELESKEKELDFVKEKLELKETALSSIETSIKGRDKVLRVKKNLHTFIQSKINECSKELESMKEQKISMKT LIEEFALALESSVEKTVDVAGEQMKHCCYRLESRKMELIELRNKLTEKRKDVEERAVAVETERQELQKEVERLKLREEELVSKEKPMEAKEKQLSNLLDE QRNKQQPETGKEFVESELESPSSWQYNGAQLAMAVSKFGRRRAEEQAAEALINIGGWVMSYVVTEFRLITIIDVVYRLKSPVCRNLLGTNPWDTVRPSRI LLTWLLWCLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	0	1
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	1.7	0.7518
AT5G22120			unknown protein		Lus10004788 [exp]	2.2	0.7812
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	6.6	0.7548
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	10.5	0.6949
AT5G67620			unknown protein		Lus10011549 [exp]	15.5	0.7115
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	17.9	0.7312
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	18.5	0.6779
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	20.6	0.7388
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	23.3	0.6789
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	24.1	0.7042

Compare expression of checked genes

Lus10027766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.