Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 148 / 2e-39 Carbohydrate-binding-like fold (.1.2) AT2G40070 83 / 5e-16 unknown protein AT3G09000 71 / 2e-12 proline-rich family protein (.1) AT5G26570 64 / 4e-10 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT1G27850 48 / 3e-05 unknown protein AT2G04270 48 / 4e-05 RNEE/G RNAse E/G-like (.1.2.3.4.5) AT5G01280 44 / 0.0004 unknown protein AT2G38160 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035528 [exp] 822 / 0 AT2G40070 280 / 4e-83 unknown protein Lus10002495 [exp] 206 / 3e-57 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 198 / 3e-54 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10018226 [exp] 124 / 7e-30 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10004824 [exp] 116 / 5e-27 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10002493 [exp] 115 / 6e-27 AT2G40070 300 / 2e-95 unknown protein Lus10040188 [exp] 82 / 8e-16 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 75 / 2e-14 AT2G40070 321 / 5e-107 unknown protein Lus10037838 [exp] 77 / 5e-14 AT2G40070 551 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 169 / 9e-45 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 166 / 8e-44 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 146 / 7e-38 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.016G114900 [exp] 111 / 3e-25 AT2G40070 352 / 7e-114 unknown protein Potri.010G190300 [exp] 101 / 4e-22 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 95 / 7e-20 AT2G40070 321 / 1e-102 unknown protein Potri.002G234500 [exp] 55 / 4e-07 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 50 / 1e-05 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G177000 [exp] 49 / 1e-05 AT2G40070 82 / 9e-17 unknown protein Potri.010G056200 [exp] 45 / 0.0002 AT1G27850 240 / 1e-64 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10027767 pacid=23157031 polypeptide=Lus10027767 locus=Lus10027767.g ID=Lus10027767.BGIv1.0 annot-version=v1.0 ATGGAATCCCTTGGGAGGAATGCTTCTCCTTCTTCGTCGAGCATGATTGCCTTAACTAGCAGAACAGGAACCACCAAACCGCACAGTTTTCCATCTCTTA CGCAGTCGGTTAACGTCACTGTGACTGTGTTGCCGCATTACTCCATACGCTTGAAGGATCACGGGTGGTGTTGTTGTTCGCCGATTTCAGCTTCTGCTTC TCTCTCACACGAGCCTGTCCAGAATCGTTCTGGTTTTGCAGACGAAAAGGATACTATTCGTGTGAGATTCCTACTGCAGAAAGAATGTTCATTTGGGGAG CAGTTTGTGTTGGTAGGAGATGATTCTCTGTTAGGTTCATGGGATCCTGATAGCGGGATACCATTGGACTGGTCAGATGGACATCTTTGGGGTGTGGAAC TAGATATGCCAGTTGGGAAAACAATCAAGTACAAGTTTATCCTCAAGGCCATTGGTGGAGAGCTACTCTGGCAGCCTGACCCTGATCGAGTTCTCGAGAC ATGGCGAACTAATACAAAGACTACTATTGTTATTCTTGAAGATTGGGTGGATCCTCATGTTCAGAAGATTGTGGAGGAAGATGAACAAATTGATCCGAGC TTTGTAGAGCAAACCAATGGGAGTGTTGTCGTGAAGGAAGATCCAGAGGCAGTTGCTGACTCCTGGTTGCTGTCTGTAGCCAATAATTTAGTTCGGATTG GAAAGGTTTCGATGAATGCAATAACAAAAGGTTCTGATGCTGATGGTGATGCCGACGCCGATGCTATCCCAGGAGAGAAGCCAGTACTGTCTCTTATTGC AGAGAACATCAGTATTCCCCACCAAGAGGAGATTATAACTAGTTATAATGAAAATGCAAGGCACCAACTTGTTGGAGAAAGTGTGATAATTAGTCAACCA AAGGTGGAGCCTGCTGTACTACTTTCTCCAAGCAATGGTACTGTCACAAATTCAACATCCATCGACATTGATGGAACTTTGATACCCGAGGAAGGTGTTG ATGTGCCTGTTCTTGTACCGGGGTTATCTCCAGTTTCAAACACCCCAAGTGAAGCATCAGTTGAAGGAGTTGCAGATGTTAAGAATCCAACTTTATTAGA GTATTACCAGCAGCAGCAGCAGCAGCGTCGGAGTAGTTGTATTGTGTTGGAACTCACGACGGAGGTTCGGAAGATGGTGACGATGGAGAAGGACGAAGAG CTGGCTCTGTTCCTGGAGCTCAGGAGGCGGGAGAAGGAGAAGAGGAGCAATTTTCTCGTCAGTAATAATCCGATTACGTCGGATGCTCACCTAGGAATTA GAGGCGGAGATTCTGCAGCGACTCTGCTGGTGCCGCATCGTAAAACCGCCGCAGAAAGGTTCTTGGATTCCGAGAATGATAAATCTGAATTCGATTGGCT TATAACACCGCCAAGGACCCCAGTTTTCCCATCTGCGGAGATGGAGGCACAGAAGTCTCTGATGCATCAGCTTGGGAGGAATCCTCGTCCAACTGCCCTG AGCTCAAGGCTGACTAATATTCAGGCAGAGCCAGCTCCTAGAGGGCCATCTAAACCATCAGGATTGAATTCGTCCATTAATGCTGGTAACAGGCGACCAG CAACTTCTGTAAGAACAAGACCTGCTTCTAGACCTTCAACACCTACATCACGTCCCACTTTACCTTCACCTAGGCTGGGACGATCCTCCACTCCTACATC ACGTCCCACATTGTCATCCACAAAGCCGGAAAGAGCATCAACTCCTACAAGAACTACCACTCAACGACCATCAACTCCAAAAAGGGGTACTACTACTATT CAACGTCCATCGACGACACCTACAAGAACAACTACTGCTCAACGATCATCGACACCTATAAGAACCACTACCACTGCTCAACGATCATCGACACCGACGA GACCCTCTTTACCATCATCAAGGTCATTATCAAGACCCTCGACTCCAACCCGTCGCTCCTCAGCTCCACTATCAAGTTCACAAATTATGTCTTCTGCACC TGGTAGTAGATCCTCCTCCGTGACAAGATCAACTCCAGTTCAATCACGTGGGAGTTCCCCAACTCCAACAGCAGTGAGGCCGAGGGTGCCTTGGAATGTT GATGAAATGCCAGGGTTCTCGCATGAAGCTCCACCAAATTTAAGGACTTCAATGTCTGAAAGGCCAGCTTCTGCTACAAGGGGCAGGCCTGGAGCTCGAT CATCATCTTCTTCCACTTCTAATGGAAGACCAAGGCAGCAGTCTTCCTCTCCTGCTAGGAGGAGATCAATTTCAACTGCTTCAAATGGGAATGCTGCTGC TGCACCAGTTGGTCGGATGCCTATTTCCATCAAGAGCATAAGCCAAATCATCGATCGCGATGAAATGAGAAAACTAGCACCCGCACCACCAAAGCTACAT GATCAGCATCGCTCATCTTCGTTGTCAATGTCGTCTTCCCTCGACAGCACAGGTTCTGCGAAATCACTGTCGAAGAAATCTCTTGACATGGCCCTGCGGC ATATGGATATAAGAAGAAGCATTAACAGCAATCTAAGGCCGCTGATGACCAACGTGCCGGCTTCATCTATGTACAGCGTGAGATCAAGTACTGGTGGATC GACAAGAAGCTGGACAGTTGGTTCGGGATCACCCCATGCCACGAGCAGCAACTGTAGTAGCTCGGAGCCGAGTGTCAACAACGCTTTCTTCGCAGATGAG AATGAGTTTAGTAGTAGCGAGAGAGGGAATTCATCTCCTACCAGTCAGGCTAGTAGGTGGTAA
AA sequence Show only first row Show all	>Lus10027767 pacid=23157031 polypeptide=Lus10027767 locus=Lus10027767.g ID=Lus10027767.BGIv1.0 annot-version=v1.0 MESLGRNASPSSSSMIALTSRTGTTKPHSFPSLTQSVNVTVTVLPHYSIRLKDHGWCCCSPISASASLSHEPVQNRSGFADEKDTIRVRFLLQKECSFGE QFVLVGDDSLLGSWDPDSGIPLDWSDGHLWGVELDMPVGKTIKYKFILKAIGGELLWQPDPDRVLETWRTNTKTTIVILEDWVDPHVQKIVEEDEQIDPS FVEQTNGSVVVKEDPEAVADSWLLSVANNLVRIGKVSMNAITKGSDADGDADADAIPGEKPVLSLIAENISIPHQEEIITSYNENARHQLVGESVIISQP KVEPAVLLSPSNGTVTNSTSIDIDGTLIPEEGVDVPVLVPGLSPVSNTPSEASVEGVADVKNPTLLEYYQQQQQQRRSSCIVLELTTEVRKMVTMEKDEE LALFLELRRREKEKRSNFLVSNNPITSDAHLGIRGGDSAATLLVPHRKTAAERFLDSENDKSEFDWLITPPRTPVFPSAEMEAQKSLMHQLGRNPRPTAL SSRLTNIQAEPAPRGPSKPSGLNSSINAGNRRPATSVRTRPASRPSTPTSRPTLPSPRLGRSSTPTSRPTLSSTKPERASTPTRTTTQRPSTPKRGTTTI QRPSTTPTRTTTAQRSSTPIRTTTTAQRSSTPTRPSLPSSRSLSRPSTPTRRSSAPLSSSQIMSSAPGSRSSSVTRSTPVQSRGSSPTPTAVRPRVPWNV DEMPGFSHEAPPNLRTSMSERPASATRGRPGARSSSSSTSNGRPRQQSSSPARRRSISTASNGNAAAAPVGRMPISIKSISQIIDRDEMRKLAPAPPKLH DQHRSSSLSMSSSLDSTGSAKSLSKKSLDMALRHMDIRRSINSNLRPLMTNVPASSMYSVRSSTGGSTRSWTVGSGSPHATSSNCSSSEPSVNNAFFADE NEFSSSERGNSSPTSQASRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10027767 [exp]	0	1
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	5.3	0.8711
AT3G22520			unknown protein		Lus10000233 [exp]	8.0	0.8641
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10034485 [exp]	10.1	0.8623
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	12.5	0.8862
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	15.0	0.8813
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	19.4	0.8473
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	22.2	0.8782
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	26.5	0.8772
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	28.6	0.8725
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	32.8	0.8557

Compare expression of checked genes

Lus10027767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.