Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035527 [exp] 325 / 6e-115 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10007598 [exp] 142 / 1e-42 ND 42 / 2e-04 Lus10040145 [exp] 108 / 2e-29 ND 40 / 4e-04 Lus10000961 [exp] 106 / 6e-29 ND 39 / 5e-04 Lus10011019 [exp] 90 / 6e-21 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10016318 [exp] 42 / 0.0001 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012800 [exp] 93 / 6e-24 ND / Potri.005G022200 [exp] 86 / 4e-21 ND / Potri.013G012733 [exp] 85 / 8e-21 ND / Potri.005G022250 [exp] 77 / 2e-17 ND / Potri.005G022400 [exp] 72 / 8e-16 ND / Potri.005G022300 [exp] 71 / 3e-15 ND / Potri.005G195200 [exp] 62 / 5e-12 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G122000 [exp] 42 / 4e-05 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027768 pacid=23156876 polypeptide=Lus10027768 locus=Lus10027768.g ID=Lus10027768.BGIv1.0 annot-version=v1.0 ATGAATTCCTCCATCACTGCCTCAATCATACTCTCATGCCTGATCACATTGCAACTTCTATTGTCTCAAGCAACCGCTCGACCAATCGCCCATCACGATC GCCACTGCCTGAATCAAATCACACTACAGAAAGAAGTCTGCAACAGAACCTACGGCCTCGATTTCAACGTCTGCATCCGAACCTTGAGATCCGATCCCAA GGCGTCAACCGCCGACAACGTCAAGGCCCTCGCCGTCGCCGTCTTCGAGACCACTAAGGAACAGTCGCTGAATCTGAGCCGGACGTTCGGGAAAATCGCG ATACGCGACGGCGCGGGGAAGTCGGCGATGGAGATGTGCGCGTACTACTACAAGGACGCGGCGATCTTCTTCAGGCCGACGGGGTTGGGAGAGATGACGA AGAGCCTCGAGTTGCATTCCGCGTTGGACGATTCGCACTACTGCGACGCCGCGTTGGAGACGAAGAAGGTTCGGCTTGATCGGTCCGTGGAGGAGGAGAT TCGGAAGTGGAGGAAGCTTTACGCGATTGCGTACGGGATTGTGATGTACGCGGAGGATGTGTACGGCGGGACTGTTGGTTGA
AA sequence Show only first row Show all	>Lus10027768 pacid=23156876 polypeptide=Lus10027768 locus=Lus10027768.g ID=Lus10027768.BGIv1.0 annot-version=v1.0 MNSSITASIILSCLITLQLLLSQATARPIAHHDRHCLNQITLQKEVCNRTYGLDFNVCIRTLRSDPKASTADNVKALAVAVFETTKEQSLNLSRTFGKIA IRDGAGKSAMEMCAYYYKDAAIFFRPTGLGEMTKSLELHSALDDSHYCDAALETKKVRLDRSVEEEIRKWRKLYAIAYGIVMYAEDVYGGTVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027768 [exp]	0	1
					Lus10024863 [exp]	5.5	0.6756
AT5G03050			unknown protein		Lus10012904 [exp]	24.1	0.6226
					Lus10022950 [exp]	32.0	0.5981
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10015992 [exp]	49.4	0.5720
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	97.8	0.5819
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	164.0	0.5283

Compare expression of checked genes

Lus10027768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.