Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01250 359 / 1e-121 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 343 / 1e-115 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 336 / 2e-112 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 330 / 7e-111 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 322 / 1e-106 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 137 / 3e-35 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035526 [exp] 674 / 0 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 361 / 3e-122 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 358 / 6e-121 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 355 / 8e-120 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 348 / 1e-108 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 315 / 3e-104 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 310 / 2e-101 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 137 / 1e-34 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 129 / 2e-32 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 439 / 8e-153 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 348 / 7e-117 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 335 / 7e-112 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 276 / 4e-92 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 113 / 6e-27 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10027770 pacid=23156939 polypeptide=Lus10027770 locus=Lus10027770.g ID=Lus10027770.BGIv1.0 annot-version=v1.0 ATGAGGAAAGTCAGCGACAGAGCAAAGCCTCTGTTTTTATTCTCACTGGTTTTGATCATCTTCGTAATCCGTACTAGTTTGATCCCCACTGTAGTAGTAG TACTCCCCGTTCAATCCTCTTCGCCTTCATTAATTACCAACAAATCCTCTGAAGAGATAGTAACGAGAAGGATAATCGAATCGGCGGAGTTCGACGAGGA TGACGACGAAGACGACGATGGAGTGGTGGAGCAGAGTTACTTAGTCCCACCGTTGAACCTGACATCACAAGAAAGAATCCAATGGTTCAGGAAAAATCTC CCGAATTTCAACATTCTGAAGTCGGAGGACAACCTGACGAGCAGGTTTCAGAATCGGATTCAGGAATTCGTCCGAGGAGGCCGTTGCGGGAGAGAAGACG ATCAATTGTTTTTCTTCATGACGTGGATTTCGCCAGCCGGATCGTTCGGGGAAAGGGAGTTTCTGGCAGTGGAGAGCCTGTTCAAGTCCAATCCTGACGG ATGTTTAATCATCCTGTCGAAATCTCTCGATTCCAGTAGAGGTCGCAGGATCCTGCGGCCTCTGCTCGACCGTGGATACAAGGCGTCTGCGATGTCCCCT GATTTAGACCACCTATTTCGGGGGACGCCGGCGGAGTCCTGGTACGACGACCTGAAGCGCGGGGAGAAAGATCCCGGAGAAATATCGTTGGCGCAGAACC TGTCGAATTTGATCCGACTGGCGGTCCTATACAAGTACGGTGGGGTGTACTTGGACACGGACGTCATCGTCCTGAAGAGCTTCCGGGGGCTCAGGAACTC TATCGGAGCGCAGAGTAGCGACGTCGTGACCAATAAGTGGACTCGGTTGAACAATGCAGTCCTGGTTTTTGACCGGGGCCACCGGTTGCTCTACGAATGT ATGGCGGAATTCGATTCCACTTTCGACGGCAGCCGGTGGGGGCATAACGGGCCGTATCTCGTGTCGAGGGTAGTCAACAGGTTTGAAGGCCGTGGCAGAG GAGGTGGAAATTTCTCGATTCTGCCGCCGCTGGCGTTCTATCCGGCATACTGGAACAAGATCGGCGGGTACTTCAGGGCGCCTCGAACAAAGGCGGATTC GAGGTGGGTGAATGCTAAGCTTTTACAGTTGAGCGGGAAGACATACGCGGTTCATCTGTGGAATAAGGAAAGCAGAGGTTTCAGGATTGAAGAAGGGAGC ATCCTGTGGAGCTTGATTGCTCGCCATTGTATCATCTGTCAAGGGTTTTCATGA
AA sequence Show only first row Show all	>Lus10027770 pacid=23156939 polypeptide=Lus10027770 locus=Lus10027770.g ID=Lus10027770.BGIv1.0 annot-version=v1.0 MRKVSDRAKPLFLFSLVLIIFVIRTSLIPTVVVVLPVQSSSPSLITNKSSEEIVTRRIIESAEFDEDDDEDDDGVVEQSYLVPPLNLTSQERIQWFRKNL PNFNILKSEDNLTSRFQNRIQEFVRGGRCGREDDQLFFFMTWISPAGSFGEREFLAVESLFKSNPDGCLIILSKSLDSSRGRRILRPLLDRGYKASAMSP DLDHLFRGTPAESWYDDLKRGEKDPGEISLAQNLSNLIRLAVLYKYGGVYLDTDVIVLKSFRGLRNSIGAQSSDVVTNKWTRLNNAVLVFDRGHRLLYEC MAEFDSTFDGSRWGHNGPYLVSRVVNRFEGRGRGGGNFSILPPLAFYPAYWNKIGGYFRAPRTKADSRWVNAKLLQLSGKTYAVHLWNKESRGFRIEEGS ILWSLIARHCIICQGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	0	1
AT3G48180			unknown protein		Lus10043469 [exp]	3.5	0.9854
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	7.2	0.9839
					Lus10000859 [exp]	9.2	0.9800
AT3G15518			unknown protein		Lus10043096 [exp]	10.5	0.9546
					Lus10041163 [exp]	10.5	0.9823
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	10.9	0.9778
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	12.4	0.9695
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	12.7	0.9697
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	13.3	0.9580
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	13.4	0.9804

Compare expression of checked genes

Lus10027770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.