Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38150 312 / 3e-95 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 260 / 1e-76 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 251 / 3e-73 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 242 / 8e-71 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 213 / 4e-60 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 102 / 5e-22 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027772 [exp] 619 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 595 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 443 / 3e-143 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 384 / 3e-121 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 375 / 5e-118 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 352 / 2e-109 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 216 / 2e-60 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 101 / 2e-21 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 100 / 7e-21 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 313 / 3e-95 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 245 / 5e-74 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 243 / 4e-70 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 239 / 7e-69 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 97 / 6e-20 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10027771 pacid=23156914 polypeptide=Lus10027771 locus=Lus10027771.g ID=Lus10027771.BGIv1.0 annot-version=v1.0 ATGATGAAGAAAATGGCAAAGAAGCTGATGTTCGATTACCGCACCTTACCCAAAACTGCCAAAACACCGATCTTCTCCGCCATCTCCTTCGCCGCTCTCT TCTTCATCCTCTACTTGGACACCAACTTCCGCAGTACTAGTGATATTCCTGACGTGGCTCATCGACTCGAGCTCACATCGCGAATGAGCGTCGACTCGGG CGAAGAAGAAGAAGCTGTAGTGGACCCACTAGTCCCTCCCGTGAACGTTACCGTAGCGGGGAGGATAGAGTGGTTCCGGCAGAAACTGCCCAAACTCGAC CTGCTCAACTCGAACGACGAATTGAGCAGGTCCTTCCATAACAGAGTCGTCGACTTCTTCGACGAGAAAAACAACTGCTCGGTCCAATTCTACATGGTGT GGCTCTCGCCGGCCAGAACGTTCGGACCCAGGGAGTTTCTAGCAGCGGACACGCTATTCAAGTCCAATCCAAACGCGTGCCTAATCATCATTTCGAGATC GATGGACTCGAAAATAGGAGCCAAAAAGCTCCAGCCTCTGCTCGATCTCGGGTTCAAAGTCCTCGCAGTCACACCGGACGTGCCATTTCTAGTAGAGAAC ACACCAGGAGAAGACTGGCTAGCGGAATTGAAAACGGGGACCAAGGATCCCGGATACATCCCGCTAACCATGAACCTTTCGAATTTGATACGAATCGCAA TGATCTACAAGTACGGAGGCGTGTACTTGGACACGGACTTCATAGTCCTAAAGGACTTCTCGGGCCTGAGGAATGCAGTCGGGGCGCAGAGTATCGACTC GACAACGAACCAATGGAGCAGCATCAACAGTGCGGTGGTCATCTTCGACCGCGGGCACCCTGTAGTGCTCGAGTTCATCAAAGAATTTGCAAACACGTTC AACGGGAACAAGTGGGGAAACAACGGCCCTGCAATGTTTACCAGGGTGTTGGAGAGAGTTGTGCAACATAACGTGACGATCATGNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNAGATCTCGCTAGCTCAGGTGCTGTCGAATTTGAGCGGACTGGCGGTCCTATACAAGTACGGCGGGGTGTACTTGGACACGGACGTCATCGTC CTGAAGAGCTTCCGGGGACTCAGGAACTCGATCGGAGCGCAGAGCAGCGATGTCGTGACCAATAAGTGGACTCGGCTGAACAATGCGGTCCTGGTTTTCG ACCGGGAGCACCGGTTGCTCTACGAATTCATGGCGGAATTCGCTTCGACTTTCGACGGAAGCCGGTGGGGGCATAACGGGCCGTATCTCGTGTCGAGGGT AGTTGACAGATTTGCAGCCCGCGGTGGCGGTGGAGGCGGAAATTTCTCGATTCTGCCGCCACTAGCGTTCTATCCGGCGTACTGGAACAAGATCGGTGGG TACTTCAGGGCGCCTGGAACGAAGGCGGATTCGAGGTGGGTGAATGCTAAGCTACTACAGTTGAGCGGGAAGACATACGCGGTTCATCTGTGGAATAAGG AAAGCAGAGGTTTCAGGATCGAAGAAGGGAGCATCCTGTGGAGCTTGATTGCTCGCCATTGTATCATCTGCCAAGGGTTTTCATGA
AA sequence Show only first row Show all	>Lus10027771 pacid=23156914 polypeptide=Lus10027771 locus=Lus10027771.g ID=Lus10027771.BGIv1.0 annot-version=v1.0 MMKKMAKKLMFDYRTLPKTAKTPIFSAISFAALFFILYLDTNFRSTSDIPDVAHRLELTSRMSVDSGEEEEAVVDPLVPPVNVTVAGRIEWFRQKLPKLD LLNSNDELSRSFHNRVVDFFDEKNNCSVQFYMVWLSPARTFGPREFLAADTLFKSNPNACLIIISRSMDSKIGAKKLQPLLDLGFKVLAVTPDVPFLVEN TPGEDWLAELKTGTKDPGYIPLTMNLSNLIRIAMIYKYGGVYLDTDFIVLKDFSGLRNAVGAQSIDSTTNQWSSINSAVVIFDRGHPVVLEFIKEFANTF NGNKWGNNGPAMFTRVLERVVQHNVTIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLAQVLSNLSGLAVLYKYGGVYLDTDVIV LKSFRGLRNSIGAQSSDVVTNKWTRLNNAVLVFDREHRLLYEFMAEFASTFDGSRWGHNGPYLVSRVVDRFAARGGGGGGNFSILPPLAFYPAYWNKIGG YFRAPGTKADSRWVNAKLLQLSGKTYAVHLWNKESRGFRIEEGSILWSLIARHCIICQGFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	0	1
					Lus10003755 [exp]	1.0	0.9949
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	3.0	0.9904
					Lus10038295 [exp]	3.5	0.9900
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	3.5	0.9932
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	4.5	0.9895
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	5.5	0.9889
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	5.9	0.9887
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	6.3	0.9844
					Lus10002317 [exp]	9.4	0.9649
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	11.0	0.9407

Compare expression of checked genes

Lus10027771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.