Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38150 405 / 4e-140 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 348 / 2e-117 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 337 / 3e-113 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 327 / 2e-109 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 280 / 1e-90 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 129 / 3e-32 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035525 [exp] 752 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 621 / 0 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 574 / 0 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 511 / 0 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 365 / 8e-124 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 360 / 4e-122 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 291 / 4e-94 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 139 / 1e-35 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 137 / 7e-35 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 403 / 1e-138 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 317 / 7e-105 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 313 / 2e-103 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 241 / 1e-78 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 99 / 6e-22 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10027772 pacid=23156946 polypeptide=Lus10027772 locus=Lus10027772.g ID=Lus10027772.BGIv1.0 annot-version=v1.0 ATGATGAAGAAAATGGCAAAGAAGCTGATGTTCGATTACCGCACCTTACCCAAAACTGCCAAAACACCGATCTTCTCCGCCATCTCCTTCGCCGCTCTCT TCTTCATCCTCTACTTGGACACCAACTTCCGCAGTACTAGTGATATTCCTGACGTGGCTCATCGACTCGAGCTCACATCGCGAATGAGCGTCGACTCGGG CGAAGAAGAAGAAGCTGTAGTGGACCCACTAGTCCCTCCCGTGAACGTTACCGTAGCGGGGAGGATAGAGTGGTTCCGGCAGAAACTGCCCAAACTCGAC CTGCTCAACTCGAACGACGAATTGAGCAGGTCCTTCCATAACAGAGTCGTCGACTTCTTCGACGAGAAAAACAACTGCTCGGTCCAATTCTACATGGTGT GGCTCTCGCCGGCCAGAACGTTCGGACCCAGGGAGTTTCTAGCAGCGGACACGCTATTCAAGTCCAATCCAAACGCGTGCCTAATCATCATTTCGAGATC GATGGACTCGAAAATAGGAGCCAAAAAGCTCCAGCCTCTGCTCGATCTCGGGTTCAAAGTCCTCGCAGTCACACCGGACGTGCCATTTCTAGTAGAGAAC ACACCAGGAGAAGACTGGCTAGCGGAATTGAAAACGGGGACCAAGGATCCCGGATACATCCCGCTAACCATGAACCTTTCGAATTTGATACGAATCGCAA TGATCTACAAGTACGGAGGCGTGTACTTGGACACGGACTTCATAGTCCTAAAGGACTTCTCGGGCCTGAGGAATGCAGTCGGGGCGCAGAGTATCGACTC GACAACGAACCAATGGAGCAGCATCAACAGTGCGGTGGTCATCTTCGACCGCGGGCACCCTGTAGTGCTCGAGTTCATCAAAGAATTTGCAAACACGTTC AACGGGAACAAGTGGGGAAACAACGGCCCTGCAATGTTTACCAGGGTGTTGGAGAGAGTTGTGCACCATAACGTGACGATCATGCCTCCGAAAGCGTTCT ATCCGGTCGACTGGATCGAGATTCGGAAGCTGTTCAAGACCCCGATGACTAGCTCTCGGACGAGATGGGCGGAGGGGTTGCTGGCGGATCTGGAGCGGGA TAGCTATGCGTTGCATCTGTGGAATAAGAGGAGCAGGCAGTTGACCATTGAAGATGGGAGTGTGATGGATAGGTTGATTTCAGATCACTGTGTTGTCTGC CAACATATCAACCATGCCTGA
AA sequence Show only first row Show all	>Lus10027772 pacid=23156946 polypeptide=Lus10027772 locus=Lus10027772.g ID=Lus10027772.BGIv1.0 annot-version=v1.0 MMKKMAKKLMFDYRTLPKTAKTPIFSAISFAALFFILYLDTNFRSTSDIPDVAHRLELTSRMSVDSGEEEEAVVDPLVPPVNVTVAGRIEWFRQKLPKLD LLNSNDELSRSFHNRVVDFFDEKNNCSVQFYMVWLSPARTFGPREFLAADTLFKSNPNACLIIISRSMDSKIGAKKLQPLLDLGFKVLAVTPDVPFLVEN TPGEDWLAELKTGTKDPGYIPLTMNLSNLIRIAMIYKYGGVYLDTDFIVLKDFSGLRNAVGAQSIDSTTNQWSSINSAVVIFDRGHPVVLEFIKEFANTF NGNKWGNNGPAMFTRVLERVVHHNVTIMPPKAFYPVDWIEIRKLFKTPMTSSRTRWAEGLLADLERDSYALHLWNKRSRQLTIEDGSVMDRLISDHCVVC QHINHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	0	1
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	1.0	0.9990
					Lus10038295 [exp]	2.0	0.9969
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	2.4	0.9865
					Lus10002317 [exp]	3.5	0.9851
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	4.7	0.9449
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	5.3	0.9806
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	6.3	0.9844
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	6.7	0.9766
					Lus10003755 [exp]	6.9	0.9827
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10004165 [exp]	7.1	0.9544

Compare expression of checked genes

Lus10027772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.