Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40770 168 / 9e-52 ATPHB3 prohibitin 3 (.1) AT3G27280 166 / 5e-51 ATPHB4 prohibitin 4 (.1.2) AT4G28510 123 / 2e-34 ATPHB1 prohibitin 1 (.1) AT5G14300 122 / 4e-34 ATPHB5 prohibitin 5 (.1) AT2G20530 122 / 9e-34 ATPHB6 prohibitin 6 (.1.2) AT1G03860 119 / 9e-33 ATPHB2 prohibitin 2 (.1.2.3) AT5G44140 115 / 2e-31 ATPHB7 prohibitin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035521 [exp] 347 / 5e-122 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10032072 [exp] 168 / 9e-52 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 168 / 1e-51 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10034395 [exp] 132 / 9e-38 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10019161 [exp] 131 / 2e-37 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10042515 [exp] 129 / 1e-36 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 129 / 1e-36 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335700 [exp] 176 / 7e-55 AT5G40770 429 / 3e-153 prohibitin 3 (.1) Potri.017G065800 [exp] 176 / 7e-55 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.017G017400 [exp] 125 / 7e-35 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.007G134700 [exp] 124 / 1e-34 AT4G28510 463 / 2e-166 prohibitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10027776 pacid=23157008 polypeptide=Lus10027776 locus=Lus10027776.g ID=Lus10027776.BGIv1.0 annot-version=v1.0 ATGCAAACCGGAGCTTCCGTTTACCGCTTAATTTCTCTTGCTAGAAAATTCCTTCCCTCGGCAGCAGCACTCAGCACCACCGCTGCCGCCGCCTACTACG CCTCGGAGTTCACAGTTCCGCCAGGGCACCAAGCCGTGATTCTGGACCGGTTTCACGGAGTCGGAGAAACCTCAATCGGAGAAGGAACTCATTTCGCAAT CCCCTGGATTCAGAAGCCGTACATCGTCGACGTCCGCGACAAACACCACACCTTCTCCTGCGCCTCTCACACAAAGGACCTCCATCCCGTCAATCTATCC CTTCGAGTCTCCCTCCGTCCCGAGCTGTCGAACTTGCCAGAGACCTTCCAACATTTTGGCCTCGACTACGACGAGAGAATGCTCCCTGCCATATACAGCG AGGTACACGCCATAGTTGCTAACTACAATGTGGATCGGCTCCTTTCGACGGAGAATAATAATAGCAGTGTGTTGGATGATATCCAGGGCTCTCTGGTTGA ACGTGGGAAGTTTTTCCACCTAGTTGTAGATGGTGTTTCGGTTGTAGATATTTCGTTGAGTGAAGAGTTGTCTAAGGCTGTTGAGGAAAAGCAATTGGCA AGAAAAGGAGGCTGA
AA sequence Show only first row Show all	>Lus10027776 pacid=23157008 polypeptide=Lus10027776 locus=Lus10027776.g ID=Lus10027776.BGIv1.0 annot-version=v1.0 MQTGASVYRLISLARKFLPSAAALSTTAAAAYYASEFTVPPGHQAVILDRFHGVGETSIGEGTHFAIPWIQKPYIVDVRDKHHTFSCASHTKDLHPVNLS LRVSLRPELSNLPETFQHFGLDYDERMLPAIYSEVHAIVANYNVDRLLSTENNNSSVLDDIQGSLVERGKFFHLVVDGVSVVDISLSEELSKAVEEKQLA RKGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10027776 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	13.6	0.5500
AT5G62280			Protein of unknown function (D...		Lus10006163 [exp]	17.2	0.5332
					Lus10001918 [exp]	19.4	0.4868
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Lus10031803 [exp]	21.4	0.5533
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	21.5	0.5182
AT5G55125			Ribosomal protein L31 (.1.2)		Lus10000695 [exp]	281.4	0.3813

Compare expression of checked genes

Lus10027776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.