Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09032 42 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035520 [exp] 199 / 3e-66 AT3G09032 54 / 9e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112700 [exp] 59 / 1e-11 AT5G01225 73 / 3e-17 unknown protein Potri.006G097700 [exp] 48 / 1e-07 AT3G09032 65 / 4e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027777 pacid=23156911 polypeptide=Lus10027777 locus=Lus10027777.g ID=Lus10027777.BGIv1.0 annot-version=v1.0 ATGTCTCGGAAACCAAGCAAGCGGCTCGCCTTCTTCACTCCCGATTACTCAACCGAAAACCCAACTGCAGTGTTCCTCAAACACTCAACTTTCGACTCCC GCAGAATCGCCGCCGGCGCCGGAAACCGGAAGAGGGTCGGCGCCTCCGACGCCGTTGTCGGAATCTTCAGCTTCAAGATGCATCACCGCCGGGTGAGGAT ATTCAGGCTCTCTCCTCCCTGCCGGCTCTTCAGACGGCTCGGCGCAAAGCTAGCTAGAGTTCTGCGATTTGTCTCCCTTCGGACGAGAAGAAGAAGCAGA CAGAAGATGAGTACATCGCCGCCGGTGAGATCGAGGTTGTCCGCCGGGGAAGACTCGCAAAGGATAGAAGCGATTGAAGACTGCATAGAGTTCTTGAATT CGTCGTCTTCTTGGTGCTGCGACTCTCTGTCCCGGTCCAGCTCTGTTTCCGCTAGAACAGAGTAG
AA sequence Show only first row Show all	>Lus10027777 pacid=23156911 polypeptide=Lus10027777 locus=Lus10027777.g ID=Lus10027777.BGIv1.0 annot-version=v1.0 MSRKPSKRLAFFTPDYSTENPTAVFLKHSTFDSRRIAAGAGNRKRVGASDAVVGIFSFKMHHRRVRIFRLSPPCRLFRRLGAKLARVLRFVSLRTRRRSR QKMSTSPPVRSRLSAGEDSQRIEAIEDCIEFLNSSSSWCCDSLSRSSSVSARTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09032			unknown protein		Lus10027777 [exp]	0	1
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	1.0	0.9124
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	2.4	0.8579
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	2.6	0.8441
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	2.8	0.8684
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	4.9	0.8709
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	4.9	0.8714
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	6.3	0.8636
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	7.7	0.8229
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	8.8	0.8022
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	10.2	0.8259

Compare expression of checked genes

Lus10027777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.