Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01210 139 / 7e-41 HXXXD-type acyl-transferase family protein (.1) AT2G39980 132 / 3e-38 HXXXD-type acyl-transferase family protein (.1) AT5G42830 97 / 2e-25 HXXXD-type acyl-transferase family protein (.1) AT5G07870 93 / 5e-24 HXXXD-type acyl-transferase family protein (.1) AT5G07850 92 / 2e-23 HXXXD-type acyl-transferase family protein (.1) AT5G07860 92 / 2e-23 HXXXD-type acyl-transferase family protein (.1) AT5G67150 77 / 4e-18 HXXXD-type acyl-transferase family protein (.1) AT3G50270 75 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT3G50280 70 / 7e-16 HXXXD-type acyl-transferase family protein (.1) AT5G23940 63 / 2e-13 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035519 [exp] 155 / 1e-47 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 129 / 3e-37 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 129 / 4e-37 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 99 / 6e-26 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 91 / 3e-23 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10029492 [exp] 80 / 5e-21 AT2G39980 92 / 9e-23 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 81 / 1e-19 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10029485 [exp] 77 / 2e-19 AT5G67150 107 / 1e-27 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 76 / 1e-17 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192400 [exp] 139 / 4e-41 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 137 / 2e-40 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 137 / 2e-40 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 129 / 4e-37 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 96 / 4e-25 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 95 / 1e-24 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 93 / 4e-24 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 84 / 1e-20 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 83 / 3e-20 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 82 / 4e-20 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10027778 pacid=23157030 polypeptide=Lus10027778 locus=Lus10027778.g ID=Lus10027778.BGIv1.0 annot-version=v1.0 ATGGGGAGCTCGCCGAGGTTTCCGATGTACAACAACGATTTCGGATGGGGAAAGCCGCTGGCGATCAGGAGCGGGAAGGCGAACAAGTTCGACGGGAAGA TTTCGGCCTTTCCGGGGAGAGAAGGGGACGGGAGCGTTGACCTTGAGGTGGTGTTGGCGCCGGAGACGATGGCTGGGGTTGAGGAGGATGAGGAGTTCAT GCAGTACGTTTCGGAAACGGTTTGA
AA sequence Show only first row Show all	>Lus10027778 pacid=23157030 polypeptide=Lus10027778 locus=Lus10027778.g ID=Lus10027778.BGIv1.0 annot-version=v1.0 MGSSPRFPMYNNDFGWGKPLAIRSGKANKFDGKISAFPGREGDGSVDLEVVLAPETMAGVEEDEEFMQYVSETV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	0	1
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	1.0	0.9837
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10035519 [exp]	2.0	0.9322
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	4.6	0.8737
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	6.3	0.9023
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	8.5	0.9137
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10017183 [exp]	11.0	0.8665
					Lus10042011 [exp]	12.2	0.9002
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	13.1	0.9027
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	13.4	0.8582
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	13.5	0.8938

Compare expression of checked genes

Lus10027778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.