Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01210 320 / 8e-107 HXXXD-type acyl-transferase family protein (.1) AT2G39980 296 / 1e-97 HXXXD-type acyl-transferase family protein (.1) AT5G07850 127 / 3e-33 HXXXD-type acyl-transferase family protein (.1) AT5G07860 126 / 5e-33 HXXXD-type acyl-transferase family protein (.1) AT5G07870 126 / 7e-33 HXXXD-type acyl-transferase family protein (.1) AT5G42830 122 / 3e-31 HXXXD-type acyl-transferase family protein (.1) AT3G50300 120 / 8e-31 HXXXD-type acyl-transferase family protein (.1) AT5G38130 117 / 1e-29 HXXXD-type acyl-transferase family protein (.1) AT3G50280 115 / 5e-29 HXXXD-type acyl-transferase family protein (.1) AT3G50270 114 / 1e-28 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035519 [exp] 338 / 4e-115 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 269 / 7e-87 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 266 / 5e-86 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 139 / 2e-37 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 119 / 3e-30 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 115 / 1e-28 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 112 / 1e-27 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 109 / 4e-27 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 102 / 5e-24 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097500 [exp] 364 / 3e-124 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 345 / 8e-117 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 304 / 1e-100 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 292 / 7e-96 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 144 / 1e-39 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 143 / 4e-39 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 142 / 7e-39 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 142 / 1e-38 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 140 / 5e-38 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 139 / 1e-37 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10027779 pacid=23156922 polypeptide=Lus10027779 locus=Lus10027779.g ID=Lus10027779.BGIv1.0 annot-version=v1.0 ATGCCGTCTTCTTCCACCACCATCGTCTCCAAATGCACCATCTTTCCCAACCCAAAATCCGCCGCCGGCGTTAAAACCCTCAAGCTCTCTGTTTCCGATC TCCCCATGCTTTCCTGCCACTACATTCAAAAGGGCGTCCTCCTCTCCAAACCACCTTACCCATCTCCTCACCTAATCTCCCTCCTTAAAACCTCCCTCTC CGCCGCCCTCTCCCACTTCCCCGCCCTCGCCGGCCGCCTCACCACCGACTCCTCCGGCCACGTCCACATCGCCTGCAACGACGCCGGCGTCCATTTCATC CACGCCAGAGCAACCCATCTTTCCACAAACGACATCCTGATCCCGAACTCCGACGTCCCTGCCGAAGTCAAGGAGTTCTTCACCTTTGACAACACGATCA GCTACTCGGGGCATTCGAAACCCATCGCCGCCGTCCAGGTAACGGAGCTTTCCGACGGCGTCTTCGTCGCCTGCATCGTCAATCACGCCGTCACTGACGG CACCTCCTTCTGGCATTTCTTCAACACTTTCGCCGAATTAGCTAAAGGCGCTACCAAAATTTCCAATTCGCCTGATTTCTGTAGGGAAACGGTGTTTAAT TCCCCTGCCGTGCTCGAATTCCCCGCCGGTGGACCTAAGGTCACTTTTTCCGGCGACGTACCCCTCCGGGAGAGGGTTTTCCATTTCAGCAGAGAAGCCA TCCTCAAGCTGAAAAACAGAGCAAACAGTAATAAAGCCGTTACCGTTAATGGTAACGGTGACGGTAAGTTCGGCTTCGCATCGGTGGGGGAGATAATCGG AAAACAGAGGAATGACAAAACGGCGTCGTCCCAGATCTCGTCGTTTCAGTCTCTTTCAGCTCAGCTGTGGAGATCGGTAACACGTGCGAGGAATCTCCAT CCCTCTAAAACGACAACCCCCCTAAACCGACAATGTCGCGGATGCCTGTGA
AA sequence Show only first row Show all	>Lus10027779 pacid=23156922 polypeptide=Lus10027779 locus=Lus10027779.g ID=Lus10027779.BGIv1.0 annot-version=v1.0 MPSSSTTIVSKCTIFPNPKSAAGVKTLKLSVSDLPMLSCHYIQKGVLLSKPPYPSPHLISLLKTSLSAALSHFPALAGRLTTDSSGHVHIACNDAGVHFI HARATHLSTNDILIPNSDVPAEVKEFFTFDNTISYSGHSKPIAAVQVTELSDGVFVACIVNHAVTDGTSFWHFFNTFAELAKGATKISNSPDFCRETVFN SPAVLEFPAGGPKVTFSGDVPLRERVFHFSREAILKLKNRANSNKAVTVNGNGDGKFGFASVGEIIGKQRNDKTASSQISSFQSLSAQLWRSVTRARNLH PSKTTTPLNRQCRGCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	0	1
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	1.0	0.9837
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10035519 [exp]	1.4	0.9381
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	4.9	0.9221
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	6.0	0.9207
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	8.3	0.8806
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10017183 [exp]	8.5	0.8710
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	8.8	0.8935
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	11.5	0.8960
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	13.0	0.8548
					Lus10041251 [exp]	14.1	0.9127

Compare expression of checked genes

Lus10027779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.