Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 59 / 1e-09 F-box family protein (.1) AT4G12560 56 / 1e-08 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 55 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G10430 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT5G18160 51 / 5e-07 F-box and associated interaction domains-containing protein (.1) AT3G07870 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT4G19940 49 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT1G47790 47 / 6e-06 F-box and associated interaction domains-containing protein (.1) AT1G33530 47 / 1e-05 F-box family protein (.1) AT1G47340 45 / 3e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027824 [exp] 237 / 1e-75 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10029725 [exp] 130 / 1e-34 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10001105 [exp] 101 / 3e-24 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10015408 [exp] 98 / 8e-23 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10018008 [exp] 92 / 6e-21 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10023372 [exp] 92 / 1e-20 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10028961 [exp] 92 / 1e-20 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10009424 [exp] 84 / 8e-18 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10018969 [exp] 79 / 3e-17 AT1G32420 47 / 4e-06 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013000 [exp] 72 / 6e-14 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 67 / 2e-12 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 67 / 3e-12 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013800 [exp] 65 / 1e-11 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 64 / 4e-11 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 63 / 5e-11 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.012G099733 [exp] 61 / 2e-10 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.012G014300 [exp] 61 / 3e-10 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.008G006900 [exp] 59 / 1e-09 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 58 / 2e-09 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027780 pacid=23157070 polypeptide=Lus10027780 locus=Lus10027780.g ID=Lus10027780.BGIv1.0 annot-version=v1.0 ATGACACCTTGTATCAATACCGGCGGGGGTAGCAGCGAGGGATACTGGTTGCCGGTGGAAATAACGGTGGAGATTGTGAAAAGGCTACCCACAGCAGCCT CCATCCGGCGATCTCGTTGCGTGAGCAAATCATGGTACTCTCTTCTTTCCGATCCTGATTTCATCCGTCAAAACACCCGCTTGTTCGATCTTCATGGCAC CATTGATGATGACAAGAAGGCTAGGTTAATGATACTCCGCGCCGACAGGGCCTCGGAGTCCTCGTCGGCGGCCTCTTTCACCTACGACACTCTCCGACCC GTCTCGCCGGTATTGAAACTGACGGATGTAGTCCCTGGCCTAAAGTTTGGGCTACAAGTTGGGGGATGCTGTGATGGAATCTTTTGCTTATACCGTTTTC ATTCAGCATACGGTATTGTTCTGTGGAATCCGACCGCTTGTGATTACAGAGTTTTTCCATCACTTTCCCCAATTTTAAGTAGCAGCAAGCGAATTTGGTT GATAAATATTGGATTTGGATACGATCGGCTCACTAGATATTACAAAGTTGTTGCTATTGTGCAATACGAGGGTGATGATCATCGTTGGGGCGGTAGACCA GTAGTTGATGATGAGCAGCGTTCAGTTTACCTTTATTCTCTGAGGAACGATTCATGGAAGGCACTGGGGAGAAAGCTTCTTCCTATGTCCACTCAGGCAT TTGGGAACATGTTAAGTGTTTTGTTACGGACACTGATGGACGATTGCACTTCGTTAATCTTCACAGCGGTGGTCACAGCAGTCTTTCGATCACAGGAAGA TATCTGGAGTTTTGCGAAACAAGAACATATGTACCATCTTCTCATCGGCGGGCAGATGAATGTTTGCAACACGGGTGAATGGGAACCGTGA
AA sequence Show only first row Show all	>Lus10027780 pacid=23157070 polypeptide=Lus10027780 locus=Lus10027780.g ID=Lus10027780.BGIv1.0 annot-version=v1.0 MTPCINTGGGSSEGYWLPVEITVEIVKRLPTAASIRRSRCVSKSWYSLLSDPDFIRQNTRLFDLHGTIDDDKKARLMILRADRASESSSAASFTYDTLRP VSPVLKLTDVVPGLKFGLQVGGCCDGIFCLYRFHSAYGIVLWNPTACDYRVFPSLSPILSSSKRIWLINIGFGYDRLTRYYKVVAIVQYEGDDHRWGGRP VVDDEQRSVYLYSLRNDSWKALGRKLLPMSTQAFGNMLSVLLRTLMDDCTSLIFTAVVTAVFRSQEDIWSFAKQEHMYHLLIGGQMNVCNTGEWEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23880			F-box and associated interacti...		Lus10027780 [exp]	0	1
AT1G52342			unknown protein		Lus10043217 [exp]	2.2	0.8258
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	8.5	0.7451
AT5G05180			unknown protein		Lus10029012 [exp]	17.1	0.7630
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	18.2	0.7680
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	20.7	0.7265
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	23.2	0.6873
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	23.5	0.7339
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	23.5	0.7475
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	25.4	0.7561
AT3G60450			Phosphoglycerate mutase family...		Lus10024765 [exp]	27.1	0.6979

Compare expression of checked genes

Lus10027780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.