Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09050 253 / 2e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035515 [exp] 438 / 2e-157 AT3G09050 265 / 2e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G096700 [exp] 277 / 7e-94 AT3G09050 283 / 1e-96 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027783 pacid=23156907 polypeptide=Lus10027783 locus=Lus10027783.g ID=Lus10027783.BGIv1.0 annot-version=v1.0 ATGATTGCTTTCAAGGCCATTGGCGCCTCCTCCTCCTTCACCATCCTAAAGCAACATCATCAACAACCCTTCTTACTCCTCACCAGAAGGCCCCCAAGAA ATCACTCTCTTCTCTGCTTCTCCAAGCCCACCGACGACTCCGACTCCGATTCTTCTCCGCCGCCGCCAGAAGGTGATGGTGAAGGAGACACCCGCCGGCA AGAGCTGCTCGCCAGAATAGTCATGCTCCAAACTGAAAAAGTCCGCCTGACCGATTACCTGGACGAGAGATCTGATTACCTCACTCAATTTGCTGAAGAG GCCACCGCCGAGATCGACAAGATCGGAGAGGATGCCCTCACTCGCCTTGACGAAGCCAGTTCCAGGATAATGGAGAAAATAGAGAGCGGCATGCAAGAAT TCGAGGAATCTGCAGAGATGAACAGAGCCGAGATTGAAGAGAACGAAAACAAGTTGGTGGAATTCGAGGATCAGATAGTGAAGGATCGTAATGAAGGGAT GTTCTTTAAGAGCTTAGGTACGACGGCAGCACAGAAGGCGCCTATTGACAAAGATAAGGCCATGGCAGAAGCGCAAAAGATCAAAGCTTTGACCAAAGCA AAAGCTGAATCAGCTACAAGGAGAAACATTTACCTTGCTTTGATTGCATTGCTAGTGTTCACCATAGCTGAATCGTTCGCCGCTGGCCCGGATTGGCGGA AAGTTGCGGTTCTTGGAGCAATCTTGATTGGTTTGATAACTCAGGTGAGCTACGAGCAGAAGTTGTCATCAGATATAGAAAAGTCGGAAAAGGAAGACAA AAAGGAGTAG
AA sequence Show only first row Show all	>Lus10027783 pacid=23156907 polypeptide=Lus10027783 locus=Lus10027783.g ID=Lus10027783.BGIv1.0 annot-version=v1.0 MIAFKAIGASSSFTILKQHHQQPFLLLTRRPPRNHSLLCFSKPTDDSDSDSSPPPPEGDGEGDTRRQELLARIVMLQTEKVRLTDYLDERSDYLTQFAEE ATAEIDKIGEDALTRLDEASSRIMEKIESGMQEFEESAEMNRAEIEENENKLVEFEDQIVKDRNEGMFFKSLGTTAAQKAPIDKDKAMAEAQKIKALTKA KAESATRRNIYLALIALLVFTIAESFAAGPDWRKVAVLGAILIGLITQVSYEQKLSSDIEKSEKEDKKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09050			unknown protein		Lus10027783 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	2.4	0.9030
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Lus10037159 [exp]	3.2	0.9308
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	4.2	0.9002
AT3G27390			unknown protein		Lus10032110 [exp]	5.1	0.8970
AT5G64380			Inositol monophosphatase famil...		Lus10007061 [exp]	5.5	0.9136
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	5.7	0.8996
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	8.9	0.9222
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10021698 [exp]	9.8	0.8814
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	10.0	0.8802
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10008359 [exp]	10.7	0.8683

Compare expression of checked genes

Lus10027783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.