Plant FIBer expression Database

Lus10027784 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09060 44 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035514
[exp]
71 / 2e-16 ND 38 / 4e-04
Lus10030513
[exp]
79 / 2e-08 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G111600
[exp]
42 / 7e-05 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10027784 pacid=23157007 polypeptide=Lus10027784 locus=Lus10027784.g ID=Lus10027784.BGIv1.0 annot-version=v1.0
ATGGAGCCCCTTTCTCTAACCACAGCCTTGACGAGGATTCTCCATGTTACAAGAGTTGGGTATCCTCCATTGCTCAGAGCATCATCCAAAAACCTGATGA
CATTTGATATTCTGCCAAAAGGACAAAAGCTCTTGCTGACATTTCATCAAACACTTGGCGCTGCACCAACCGTTACAAGAAGCGCCAAAAATTCCTCAGC
CTTCTTCCATTGCTCCGTCTCAACAAATGCGTTGAGCATTGCGTCGCAAGACCTAACCCCCGGGTTGCACTGGAAAATCTCCTCCATTCGTAGGAAGGTG
GGTAGAGCCTCCGATGACCATTTTGTTGTTCAAATAAGTCCTGATTACCCTCAGAGCAATGTCTTCGGCACACTTCAACTTACGGGTTTCGACGAGTTCG
ACTACGCGTGTAATGAGATGGGCTTGATCCGGAACGGAGAGCTGCCGGAGAAGATGGCGGATTACATGAACAGAGAGGTTGCAATTTAA
AA sequence
>Lus10027784 pacid=23157007 polypeptide=Lus10027784 locus=Lus10027784.g ID=Lus10027784.BGIv1.0 annot-version=v1.0
MEPLSLTTALTRILHVTRVGYPPLLRASSKNLMTFDILPKGQKLLLTFHQTLGAAPTVTRSAKNSSAFFHCSVSTNALSIASQDLTPGLHWKISSIRRKV
GRASDDHFVVQISPDYPQSNVFGTLQLTGFDEFDYACNEMGLIRNGELPEKMADYMNREVAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10027784
[exp]
0 1
AT1G47890 AtRLP7 receptor like protein 7 (.1) Lus10016402
[exp]
1.7 0.8259
AT5G23210 SCPL34 serine carboxypeptidase-like 3... Lus10017392
[exp]
4.6 0.7712
AT1G74830 Protein of unknown function, D... Lus10033123
[exp]
8.8 0.7937
AT4G13450 Adenine nucleotide alpha hydro... Lus10014459
[exp]
11.3 0.7888
AT2G02040 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDO... Lus10040100
[exp]
13.6 0.6978
AT1G71390 AtRLP11 receptor like protein 11 (.1) Lus10016401
[exp]
14.5 0.7579
AT1G55020 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, li... Lus10001465
[exp]
15.4 0.7562
AT2G33050 AtRLP26 receptor like protein 26 (.1) Lus10019693
[exp]
15.8 0.7778
AT5G65550 UDP-Glycosyltransferase superf... Lus10028864
[exp]
15.8 0.7894
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Lus10041851
[exp]
18.5 0.7697

Lus10027784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.